View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14545_low_5 (Length: 464)

Name: NF14545_low_5
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14545_low_5
NF14545_low_5
[»] chr5 (13 HSPs)
chr5 (1-448)||(1045733-1046180)
chr5 (162-306)||(1052127-1052271)
chr5 (162-284)||(1032804-1032926)
chr5 (165-278)||(1057938-1058051)
chr5 (156-278)||(1070269-1070391)
chr5 (162-277)||(1043212-1043327)
chr5 (165-278)||(1064974-1065087)
chr5 (8-62)||(1032733-1032787)
chr5 (8-62)||(1052056-1052110)
chr5 (162-278)||(1049306-1049422)
chr5 (138-277)||(1641731-1641870)
chr5 (1-59)||(1070197-1070255)
chr5 (13-62)||(1064905-1064954)


Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 1045733 - 1046180
Alignment:
Q  1 gcctctgaaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagggtaacttgcaattaatacaaaccaatttcataactatcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1045733 gcctctgaaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagggtaacttgcaattaatacaaaccaatttcataactatcttt 1045832  T
Q  101 aacaaacttcaactaattaattctaatgttatatatgtgaaggtcttcaaacaaacctggcatatggacaaaagagcaagtcgaagcgtggaaacctatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1045833 aacaaacttcaactaattaattctaatgttatatatgtgaaggtcttcaaacacacctggcatatggacaaaagagcaagtcgaagcgtggaaacctatc 1045932  T
Q  201 gtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttggcatgttggtagggtttctaattctggtatgcatttagtttaatcaaattagc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1045933 gtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttggcttgttggtagggtttctaattctggtatgcatttagtttaatcaaattagc 1046032  T
Q  301 aattaactaacaaannnnnnnnnnnnnnnnnnnnnnnnnaggtcggaattgaatttttgttacagaatgatattgatttatgttcactagtttaattaca 400  Q
    ||||||||||||||                         |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1046033 aattaactaacaaattttttgatttttcagtatttttttaggtaggaattgaatttttgttacagaatgatattgatttatgttcactagtttaattaca 1046132  T
Q  401 aatttacatgtatgcattctacacatttattatacacatgtaatattg 448  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  1046133 aatttacatgtatgtattctacacatttattatacacatgtaatattg 1046180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 306
Target Start/End: Original strand, 1052127 - 1052271
Alignment:
Q  162 atatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttggcatgttggtaggg 261  Q
    |||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| |||||||||||||| || |    
T  1052127 atatggactaaagagcatgtcgaggcgtggaaacctattgtggatgctgttcatgccaaaggtgctacattcttctgtcagatttggcatgttggaagag 1052226  T
Q  262 tttctaattctggtatgcatttagtttaatcaaattagcaattaa 306  Q
    ||||||||||| ||||| ||||| ||| ||| ||| |||||||||    
T  1052227 tttctaattctagtatgtatttaattttatctaatgagcaattaa 1052271  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 1032804 - 1032926
Alignment:
Q  162 atatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttggcatgttggtaggg 261  Q
    |||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| |||||||||||||| || |    
T  1032804 atatggactaaagagcatgtcgaggcgtggaaacctattgtggatgctgttcatgccaaaggtgctacattcttctgtcagatttggcatgttggaagag 1032903  T
Q  262 tttctaattctggtatgcattta 284  Q
    ||||||||||| ||||| |||||    
T  1032904 tttctaattctagtatgtattta 1032926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 1057938 - 1058051
Alignment:
Q  165 tggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttggcatgttggtagggttt 264  Q
    ||||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||  ||| |||||||| ||||| || ||||    
T  1057938 tggactaaagagcacgtcgaggcgtggaaacctattgtggatgctgtccatgccaaaggtgctaccttcttctgtcagatttggcacgttggaagagttt 1058037  T
Q  265 ctaattctggtatg 278  Q
    || || ||||||||    
T  1058038 ctgatactggtatg 1058051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 1070269 - 1070391
Alignment:
Q  156 cctggcatatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttggcatgttg 255  Q
    ||||| |||||||| |||||||||||||| || |||||||| || |||||||||||||||| |||||| | |  ||| |||  |||||||||||||||||    
T  1070269 cctggtatatggactaaagagcaagtcgatgcatggaaacccattgtggatgctgttcatgacaaaggcggtgtatttttctgtcaaatttggcatgttg 1070368  T
Q  256 gtagggtttctaattctggtatg 278  Q
    | || |||||| || ||||||||    
T  1070369 gaagagtttctgatactggtatg 1070391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 277
Target Start/End: Original strand, 1043212 - 1043327
Alignment:
Q  162 atatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttggcatgttggtaggg 261  Q
    |||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||| |||||| | || ||| |||  ||| |||||||||||||| || |    
T  1043212 atatggactaaagagcaagttgaggcgtggaaacctatcgtagatgcggttcatgacaaaggcggtatatttttctgtcagatttggcatgttggaagag 1043311  T
Q  262 tttctaattctggtat 277  Q
    |||| ||||| |||||    
T  1043312 tttcaaattcaggtat 1043327  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 1064974 - 1065087
Alignment:
Q  165 tggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttggcatgttggtagggttt 264  Q
    ||||| |||||||| ||||| || |||||||| || ||||||||||||||||| |||||||||||  ||||   ||| |||||||||||||| || ||||    
T  1064974 tggactaaagagcatgtcgaggcatggaaacccattgtggatgctgttcatgctaaaggtgctaccatcttttgtcagatttggcatgttggaagagttt 1065073  T
Q  265 ctaattctggtatg 278  Q
    || |||| ||||||    
T  1065074 ctgattcaggtatg 1065087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 1032733 - 1032787
Alignment:
Q  8 aaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagggta 62  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  1032733 aaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggta 1032787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 1052056 - 1052110
Alignment:
Q  8 aaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagggta 62  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  1052056 aaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggta 1052110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 1049306 - 1049422
Alignment:
Q  162 atatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttggcatgttggtaggg 261  Q
    |||||||| |||||||| || || |||||||||||||| ||  |||| |||||||  ||||| | || ||| |||  |||||||||||||| ||| ||||    
T  1049306 atatggactaaagagcatgttgaggcgtggaaacctattgtaaatgcggttcatgataaaggcggtatatttttctgtcaaatttggcatgctggaaggg 1049405  T
Q  262 tttctaattctggtatg 278  Q
    |||| ||||| ||||||    
T  1049406 tttcaaattcaggtatg 1049422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 1641870 - 1641731
Alignment:
Q  138 tgaaggtcttcaaacaaacctggcatatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcg 237  Q
    ||||||| | |||||| ||| ||||| |||| |||||| ||||| ||| | |||||||| ||  | |||||||||||||||||||  | || ||||||      
T  1641870 tgaaggtatccaaacacaccaggcatttggagaaaagatcaagttgaaacttggaaacccattatagatgctgttcatgccaaagaaggtatattctttt 1641771  T
Q  238 atcaaatttggcatgttggtagggtttctaattctggtat 277  Q
     ||| |||||||||| ||| |||| ||||||||| |||||    
T  1641770 gtcagatttggcatggtggaagggcttctaattcaggtat 1641731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1070197 - 1070255
Alignment:
Q  1 gcctctgaaggtggtcttctcatatctgaagctaccggggtctctgaaactgctcaagg 59  Q
    |||||| ||||||||||||||||| | ||||||||||| |||||||| || ||||||||    
T  1070197 gcctctaaaggtggtcttctcatagccgaagctaccggtgtctctgataccgctcaagg 1070255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 1064905 - 1064954
Alignment:
Q  13 ggtcttctcatatctgaagctaccggggtctctgaaactgctcaagggta 62  Q
    |||||||||||| | ||||||||||| |||||||| || |||||||||||    
T  1064905 ggtcttctcataaccgaagctaccggtgtctctgacaccgctcaagggta 1064954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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