View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14545_low_7 (Length: 437)
Name: NF14545_low_7
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14545_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 75 - 363
Target Start/End: Complemental strand, 4871480 - 4871192
Alignment:
| Q |
75 |
ctcccaaaatcaatcgctgctcgaagatattctggaagttacgacccaaagattgccctccagccacacatttctgaaacatcaatgcaacaagacatat |
174 |
Q |
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| T |
4871480 |
ctcccaaaatcaatcgctgctcgaagatattgtggaagttacgacccaaagattgccctccagccacacatttctgaaacatcaatgcaacaagacatat |
4871381 |
T |
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| Q |
175 |
caatatctactaagtaattgtaatttacttgtaccaggaagtttaggtggctggttttggttcaattatttagggggtctattgatgtggtgttgatggc |
274 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
4871380 |
caatatctactaagtaattgtaatttactggtaccaggaagtttaggtggctggtttttgttcaattatttaaggggtctattgatgtggtgttgatgga |
4871281 |
T |
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| Q |
275 |
aactggtttgattttgtgttaggggaaagtctgggtgttttttcttgatttggttaaggtttttctgctgtgattctattgtattaagg |
363 |
Q |
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| T |
4871280 |
aactggtttgattttgtgttaggggaaggtctgggtgtgtttgcttgatttggttaaggtttttctgctgtgattatattgtattaagg |
4871192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 71 - 282
Target Start/End: Complemental strand, 4845725 - 4845515
Alignment:
| Q |
71 |
aaacctcccaaaatcaatcgctgctcgaagatattctggaagttacgacccaaagattgccctccagccacacatttctgaaacatcaatgcaacaagac |
170 |
Q |
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| T |
4845725 |
aaacctcccaaaatcaatcgctgctcgaagatattgtggaagttacgacccaaagattaccctccagccacacatttctgaaacatcaatgcaacaagac |
4845626 |
T |
|
| Q |
171 |
atatcaatatctactaagtaattgtaatttacttgtaccaggaagtttaggtggctggttttggttcaattatttagggggtctattgatgtggtgttga |
270 |
Q |
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| T |
4845625 |
atatcaatatctactaagtaattgtaatttactggtaccaggaagtttaggtggctggtttttgttcaattattta-ggggtctattgatgtggtgttga |
4845527 |
T |
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| Q |
271 |
tggcaactggtt |
282 |
Q |
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||| |||||||| |
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| T |
4845526 |
tggaaactggtt |
4845515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 4826270 - 4826196
Alignment:
| Q |
121 |
caaagattgccctccagccacacatttctgaaacatcaatgcaacaagacatatcaatatctactaagtaattgt |
195 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4826270 |
caaaaattgccctccacccacacatttctgaaacatcaatgcaacaagacatatcaatatctactaagtaattgt |
4826196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 4841636 - 4841583
Alignment:
| Q |
310 |
tgttttttcttgatttggttaaggtttttctgctgtgattctattgtattaagg |
363 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4841636 |
tgtttttgcttgatttggttaaggtttttctgctgtgattctattgtattaagg |
4841583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 4834911 - 4834866
Alignment:
| Q |
318 |
cttgatttggttaaggtttttctgctgtgattctattgtattaagg |
363 |
Q |
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| T |
4834911 |
cttgatttggttaaggtttttctgctgtgattctattgtattaagg |
4834866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4835156 - 4835111
Alignment:
| Q |
1 |
tgctgctcttatgtttgttcctcgacatttttctgatgctgccttt |
46 |
Q |
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| T |
4835156 |
tgctgctcttatgtttggtcctcaacattttgctgatgctgccttt |
4835111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 4841687 - 4841634
Alignment:
| Q |
142 |
acatttctgaaacatcaatgcaacaagacatatcaatatctactaagtaattgt |
195 |
Q |
| |
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||||||||||||||||||||| ||||| |||| ||||||| |||||| |||||| |
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| T |
4841687 |
acatttctgaaacatcaatgcgacaaggcataccaatatcaactaagcaattgt |
4841634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 4860577 - 4860515
Alignment:
| Q |
126 |
attgccctccagccacacatttctgaaacatcaatgcaacaagacatatcaatatctactaag |
188 |
Q |
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||||||||||| | ||||||||| ||||||||| || |||| ||||||||||||||||||| |
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| T |
4860577 |
attgccctccacctgcacatttctaaaacatcaacgcggcaaggcatatcaatatctactaag |
4860515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 4834975 - 4834922
Alignment:
| Q |
142 |
acatttctgaaacatcaatgcaacaagacatatcaatatctactaagtaattgt |
195 |
Q |
| |
|
|||||||||||||||||| || ||||| |||| |||||| ||||||||||||| |
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| T |
4834975 |
acatttctgaaacatcaacgcgacaaggcatacaaatatcaactaagtaattgt |
4834922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 4860510 - 4860482
Alignment:
| Q |
335 |
ttttctgctgtgattctattgtattaagg |
363 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4860510 |
ttttctgctgtgattctattgtattaagg |
4860482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 4880517 - 4880489
Alignment:
| Q |
335 |
ttttctgctgtgattctattgtattaagg |
363 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4880517 |
ttttctgctgtgattctattgtattaagg |
4880489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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