View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14546_high_3 (Length: 637)
Name: NF14546_high_3
Description: NF14546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14546_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 333 - 619
Target Start/End: Complemental strand, 44001682 - 44001399
Alignment:
| Q |
333 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatcatcaagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
432 |
Q |
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| T |
44001682 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatca---agatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
44001586 |
T |
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| Q |
433 |
cacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaacttgggattaggcctatggttcatgaaattgatcaagaccctgaagga |
532 |
Q |
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| T |
44001585 |
cacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaacttgggattaggcctatggttcatgaaattgatcaagaccctgaagga |
44001486 |
T |
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| Q |
533 |
agggaaatggagaaagctttgttgaggttaggttgtactgcacctgttcctgctgtgttcattggagggcaactgatggggtccacc |
619 |
Q |
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| T |
44001485 |
agggaaatggagaaagctttgttgaggttaggttgtactgcacctgttcctgctgtgttcattggagggcaactgatggggtccacc |
44001399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 44002004 - 44001730
Alignment:
| Q |
8 |
tcgaagaaaatcacacacttattgagtatcgtaaaagcacaaactcttttcaatgtgcttcctaagttagttcctataaatactctcatttaccaccatt |
107 |
Q |
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| T |
44002004 |
tcgaataaaatcacacacttattgagtatcgtaaaagcacaacctcttttcaatgtgcttcctaagttagttcctataaatactctcatttaccaccatt |
44001905 |
T |
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| Q |
108 |
tcatttcaaaataacctcaaccatcatatataattttctatctcacttaaacttccaaacccaatacaaccatcagatcgaattcagtttcgattcgatc |
207 |
Q |
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| T |
44001904 |
tcatttcaaaataacctcaaccatcatatataattttctatctcacttaaacttccaaacccaatacaaccatcagatcgaattcagattcgattcgatc |
44001805 |
T |
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| Q |
208 |
tggtggtttgggcggtctaaataactcttaattaaggtaataaatctaaacaaatattatctcaaacttagactttctc |
286 |
Q |
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| T |
44001804 |
tggtggtttgggcggtctaaataactc----ttaaggtaataaatctaaacaaatattatctcaaacttagactttctc |
44001730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 383 - 600
Target Start/End: Original strand, 39861478 - 39861695
Alignment:
| Q |
383 |
aagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaag |
482 |
Q |
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| T |
39861478 |
aagatggagaaggtgatgaggttggctacagaaaagggtgttgtgattttcaccaagagctcttgttgtttgtgctatgcagtgaacattttgtttcaag |
39861577 |
T |
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| Q |
483 |
aacttgggattaggcctatggttcatgaaattgatcaagaccctgaaggaagggaaatggagaaagctttgttgaggttaggttgtactgcacctgttcc |
582 |
Q |
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| T |
39861578 |
aaattggagtgttccctgtggttcatgaaattgacaaagatcctgaaggaaaagaaatggagaaagctataacaaagttgggttgtaatgcacctgtccc |
39861677 |
T |
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| Q |
583 |
tgctgtgttcattggagg |
600 |
Q |
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| T |
39861678 |
tgcagtattcattggagg |
39861695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 386 - 600
Target Start/End: Original strand, 39865935 - 39866149
Alignment:
| Q |
386 |
atggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaac |
485 |
Q |
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| T |
39865935 |
atggagaaggtgatgaggttggctacagaaaagggtgtggtggtattcaccaagagctcttgttgtctatgctatgcagtgaacattttgtttcaagaaa |
39866034 |
T |
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| Q |
486 |
ttgggattaggcctatggttcatgaaattgatcaagaccctgaaggaagggaaatggagaaagctttgttgaggttaggttgtactgcacctgttcctgc |
585 |
Q |
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|||| | ||| || ||||||||||||| |||| |||||||| | ||||||||||||||| | | ||| ||||||| ||||||||| ||||| |
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| T |
39866035 |
ttggagtgtaccctgtgattcatgaaattgacaaagatcctgaagggaaagaaatggagaaagctataacaaagttgggttgtaatgcacctgtccctgc |
39866134 |
T |
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| Q |
586 |
tgtgttcattggagg |
600 |
Q |
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| T |
39866135 |
agtattcattggagg |
39866149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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