View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14546_high_8 (Length: 452)

Name: NF14546_high_8
Description: NF14546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14546_high_8
NF14546_high_8
[»] chr5 (3 HSPs)
chr5 (18-270)||(671192-671457)
chr5 (321-452)||(669302-669430)
chr5 (18-137)||(8123394-8123523)
[»] chr3 (3 HSPs)
chr3 (17-137)||(55211838-55211968)
chr3 (17-83)||(30911985-30912051)
chr3 (86-138)||(14029172-14029224)
[»] chr7 (2 HSPs)
chr7 (18-137)||(42513217-42513346)
chr7 (18-83)||(38572366-38572431)
[»] chr6 (3 HSPs)
chr6 (17-137)||(13886454-13886584)
chr6 (86-137)||(33242716-33242766)
chr6 (17-87)||(7426512-7426582)
[»] chr1 (3 HSPs)
chr1 (17-83)||(18584040-18584106)
chr1 (86-137)||(13087573-13087624)
chr1 (86-142)||(21076208-21076264)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 671457 - 671192
Alignment:
Q  18 accctaacctactcaatattatcctctaacaatataccttattgatccttcgagattaagttgagttata----------gaactagccgagtcactata 107  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||| |||          ||| ||||||||||||||||    
T  671457 accctaacctactcaatattatcccctaacaatatatcttatggatccttctagattaaggtgagtcataataacatctagaattagccgagtcactata 671358  T
Q  108 ttagtgctccttattctaaatatcctatcaatttccccttggttttaccaaatgtgt--agcttatcccctcacgttaatttgaaagagagataaatgta 205  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  671357 ttaatgctccttattctaaatatcctatcagtttccccttggttttaccaaatgtgtaaagcttatcccctcacattaatttgaaagagagataaatgta 671258  T
Q  206 taagtgagagta-ttttttcggttacatttaatgggagtataaatgtataactaaagaagaatgga 270  Q
    |||||||||||| |||||| ||||||||| | ||| ||||||||||||||||||||||||||||||    
T  671257 taagtgagagtatttttttgggttacattgagtggaagtataaatgtataactaaagaagaatgga 671192  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 321 - 452
Target Start/End: Complemental strand, 669430 - 669302
Alignment:
Q  321 gcatccgtgaaaattcgtacgcacaagtcctgtactgtttagcacttaaaacttctttagaaaaacacaaatacaatataactattgtaccnnnnnnnga 420  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||        |    
T  669430 gcattcgtgaaaattcgtacgcacaagtcccgtactgtttagcacttaaaacttctctagaaaaacacaaatacaataaaactattgtaccaaaaa---a 669334  T
Q  421 aatactataaaaatatagaccctatgcttctc 452  Q
    |||||||||||||||||||||  |||||||||    
T  669333 aatactataaaaatatagaccaaatgcttctc 669302  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 8123523 - 8123394
Alignment:
Q  18 accctaacctactcaatattatcctctaacaatataccttattgatccttcgagattaagttgagttata----------gaactagccgagtcactata 107  Q
    |||||||| ||||||||||||||| ||||||||| | ||| | |||||||| |||||||| | ||| |||          |||||||  ||||||| | |    
T  8123523 accctaacatactcaatattatcccctaacaatagatcttctagatccttctagattaaggtcagtcataataacttctagaactagatgagtcaccaga 8123424  T
Q  108 ttagtgctccttattctaaatatcctatca 137  Q
    ||||||||||||||||||||||||||||||    
T  8123423 ttagtgctccttattctaaatatcctatca 8123394  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 55211838 - 55211968
Alignment:
Q  17 caccctaacctactcaatattatcctctaacaatataccttattgatccttcgagattaagttgagt----------tatagaactagccgagtcactat 106  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||| |||||||  |||||||| |||||          | |||||||||||||||| | |     
T  55211838 caccctaacatactcaatattatcccctaccaatataccttatggatccttttagattaagatgagtcgtgataacttttagaactagccgagtcgccac 55211937  T
Q  107 attagtgctccttattctaaatatcctatca 137  Q
    |||||||||||||||||||||||||||||||    
T  55211938 attagtgctccttattctaaatatcctatca 55211968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 30912051 - 30911985
Alignment:
Q  17 caccctaacctactcaatattatcctctaacaatataccttattgatccttcgagattaagttgagt 83  Q
    ||||||||| ||||||||||||||| ||||||| |||  || | |||||||| |||||||| |||||    
T  30912051 caccctaacatactcaatattatcccctaacaagatatattttagatccttctagattaaggtgagt 30911985  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 14029224 - 14029172
Alignment:
Q  86 tagaactagccgagtcactatattagtgctccttattctaaatatcctatcaa 138  Q
    ||||||||||||||||||   ||| ||||| ||||||||||||||| ||||||    
T  14029224 tagaactagccgagtcaccgcatttgtgcttcttattctaaatatcttatcaa 14029172  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 42513217 - 42513346
Alignment:
Q  18 accctaacctactcaatattatcctctaacaatataccttattgatccttcgagattaagttgag----------ttatagaactagccgagtcactata 107  Q
    |||||||| ||||||||||||||| ||||||||| ||||| | |||||||| |||||||| ||||          || |||||||||  ||||||| | |    
T  42513217 accctaacatactcaatattatcccctaacaatagaccttctagatccttctagattaaggtgagtcataataacttctagaactagatgagtcaccaca 42513316  T
Q  108 ttagtgctccttattctaaatatcctatca 137  Q
    ||||||||||||||||||||||||||||||    
T  42513317 ttagtgctccttattctaaatatcctatca 42513346  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 38572366 - 38572431
Alignment:
Q  18 accctaacctactcaatattatcctctaacaatataccttattgatccttcgagattaagttgagt 83  Q
    |||||||| ||||||||||||||| ||||||| ||||||| | |||||||  |||||||| |||||    
T  38572366 accctaacttactcaatattatcccctaacaagataccttctagatccttttagattaaggtgagt 38572431  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 13886584 - 13886454
Alignment:
Q  17 caccctaacctactcaatattatcctctaacaatataccttattgatccttcgagattaagttgagt----------tatagaactagccgagtcactat 106  Q
    ||||||||| |||| ||||||| ||  |||||||||||||| | |||| ||| |||||||| |||||          |||||||||||| ||||||| |     
T  13886584 caccctaacatacttaatattaccccttaacaatataccttttagatctttctagattaaggtgagtcataataatttatagaactagcagagtcaccac 13886485  T
Q  107 attagtgctccttattctaaatatcctatca 137  Q
    |||||||||||||||||||| ||||||||||    
T  13886484 attagtgctccttattctaactatcctatca 13886454  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 33242766 - 33242716
Alignment:
Q  86 tagaactagccgagtcactatattagtgctccttattctaaatatcctatca 137  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  33242766 tagaactagctgagtcaccatattagtgctccttattct-aatatcctatca 33242716  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 7426582 - 7426512
Alignment:
Q  17 caccctaacctactcaatattatcctctaacaatataccttattgatccttcgagattaagttgagttata 87  Q
    |||| |||| ||||||||||||||| ||||||| ||| ||| | |||||| | |||||||| |||||||||    
T  7426582 caccataacatactcaatattatcccctaacaagataacttctagatcctactagattaagatgagttata 7426512  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 18584040 - 18584106
Alignment:
Q  17 caccctaacctactcaatattatcctctaacaatataccttattgatccttcgagattaagttgagt 83  Q
    ||||||||| ||||||||||||||| |||| |||||||||| | |||||||| |||||||| |||||    
T  18584040 caccctaacatactcaatattatcccctaataatataccttttagatccttctagattaaggtgagt 18584106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 13087624 - 13087573
Alignment:
Q  86 tagaactagccgagtcactatattagtgctccttattctaaatatcctatca 137  Q
    |||||||||||||||||| | |||| ||||||||||||| ||||||||||||    
T  13087624 tagaactagccgagtcaccacattaatgctccttattctgaatatcctatca 13087573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 21076208 - 21076264
Alignment:
Q  86 tagaactagccgagtcactatattagtgctccttattctaaatatcctatcaatttc 142  Q
    |||||||||  ||||||| | |||||| |||||||||||||  ||||||||||||||    
T  21076208 tagaactaggtgagtcaccacattagtactccttattctaaccatcctatcaatttc 21076264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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