View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14546_low_1 (Length: 754)
Name: NF14546_low_1
Description: NF14546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14546_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 389 - 738
Target Start/End: Original strand, 32087772 - 32088121
Alignment:
| Q |
389 |
tttattgagtccaatgtacaaatatgggttgaggaggatatgatattctcgttttgactaactaagttggttgacatcagtatctattatgtcatattat |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32087772 |
tttattgagtccaatgtacaaatatgggttgaggaggatatgatattctcgttttgactaactaagttggtagacatcagtatctattatgtcatattat |
32087871 |
T |
|
| Q |
489 |
acatttgcagttaaattatatttttattggtacaagacatgtgtttttattttcttaaaattggnnnnnnntttccgttatttaagaaggtgatacatgt |
588 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||| |||||||||||| ||||||||||| |||| ||||||||||| |||||||||||| |
|
|
| T |
32087872 |
acatttgcagttaaactatatttttatttgtacaagacaagtgtttttatttccttaaaattggaaaatgttttctgttatttaagacggtgatacatgt |
32087971 |
T |
|
| Q |
589 |
tttccaacaatcaatattggatccctaacatgatgtggagtccactactttttaagtgtgtattcggtgcaattaattaaacaataaaaactattttttg |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32087972 |
tttccaacaatcaatattggatccctaacatgatgtggagtccactactttttaagtgtgtattcggtgcaattaattaaacaataaaaactattttttg |
32088071 |
T |
|
| Q |
689 |
acataaatcatctttgttttctcttaattacaactagtttatcatactat |
738 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32088072 |
acatagatcatctttgatttctcttaattacaactagtttatcatactat |
32088121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 32087385 - 32087653
Alignment:
| Q |
1 |
ataagcaaataaaccatttacatgaaaccatatatcctcacattttcccttatcatttgcaattacttttccagctattcctttagggtataaatagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
32087385 |
ataagcaaataaaccatttacatgaaaccatatatcctcacattttcccttatcatttgcaattactttttcagctattcctttaggatataaatagagt |
32087484 |
T |
|
| Q |
101 |
aaataagggtacttttagaaaataaaacataacctttagaaaagtcaaatcaatttgaatttttaattcatatgaacatgttataatgacatacatattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32087485 |
aaataagggtacttttagaaaataaaacataacctttagaaaattcaaatcaatttgaatttttaattcatatgaacatgttataatgacatacatattt |
32087584 |
T |
|
| Q |
201 |
tgagacgaggtcttgacaattttggtcagacataactctttttgagagattccccaacataattagtgg |
269 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32087585 |
tgagatgaagtcttgacaattttggtcagacataactctttttgagagattccccaacataattagtgg |
32087653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 415 - 738
Target Start/End: Original strand, 32075388 - 32075711
Alignment:
| Q |
415 |
ggttgaggaggatatgatattctcgttttgactaactaagttggttgacatcagtatctattatgtcatattatacatttgcagttaaattatattttta |
514 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32075388 |
ggttgaggaggatataatattctcgttttgactaactaagttggtagacatctgtatctaatatgtcatactatacatttgcagttaaattatattttta |
32075487 |
T |
|
| Q |
515 |
ttggtacaagacatgtgtttttattttcttaaaattggnnnnnnntttccgttatttaagaaggtgatacatgttttccaacaatcaatattggatccct |
614 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||||| || | |
|
|
| T |
32075488 |
ttggtacaagacatgtgtttttatttccttaaaattggaaaatcttttctgttatttaagacggtgatacatgtttttcaacaatcaatattgggtctca |
32075587 |
T |
|
| Q |
615 |
aacatgatgtggagtccactactttttaagtgtgtattcggtgcaattaattaaacaataaaaactattttttgacataaatcatctttgttttctctta |
714 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
32075588 |
aacatgatgtggagtccactactttctaagtgtgtattcggtgcaattaattaaacaataaaaactattttttgacatagatcatctttgttttctgtta |
32075687 |
T |
|
| Q |
715 |
attacaactagtttatcatactat |
738 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
32075688 |
attacaactagtttatcatactat |
32075711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 32075072 - 32075336
Alignment:
| Q |
1 |
ataagcaaataaaccatttacatgaaaccatatatcctcacattttcccttatcatttgcaattacttttccagctattcctttagggtataaatagagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||| |||| ||||| |
|
|
| T |
32075072 |
ataagcaaataaaccatttacatgaaaccatatatcctcacattttcccataccatttgcaattactttttcagctattccttttgggtttaaaaagagt |
32075171 |
T |
|
| Q |
101 |
aaataagggtacttttagaaaataaaacataacctttagaaaagtcaaatcaatttgaatttttaattcatatgaacatgttataatgacatacatattt |
200 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32075172 |
aaataagggtagttttagaaaataaaatataaccttt--aaaattcaaatcaatttgaatttttaattcatatgaacatgttataatgacatacatattt |
32075269 |
T |
|
| Q |
201 |
tgagacgaggtcttgacaattttggtcagacataactctttttgagagattccccaacataattagtg |
268 |
Q |
| |
|
||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32075270 |
tgagatgaaatcgagacaattttggtcagacataact-tttttgagagattccccaacataattagtg |
32075336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 515 - 738
Target Start/End: Original strand, 32105550 - 32105773
Alignment:
| Q |
515 |
ttggtacaagacatgtgtttttattttcttaaaattggnnnnnnntttccgttatttaagaaggtgatacatgttttccaacaatcaatattggatccct |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||| || | | |
|
|
| T |
32105550 |
ttggtacaagacatgtgtttttattttcttaaaattgaaaaatcttttccgttatttgagatggtgatacatgttttttaacaatcaataccgggttcta |
32105649 |
T |
|
| Q |
615 |
aacatgatgtggagtccactactttttaagtgtgtattcggtgcaattaattaaacaataaaaactattttttgacataaatcatctttgttttctctta |
714 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
32105650 |
aacatgatgtgaagtccactactttttaagtgtatattcggttcaattaattaaacaataaaaattattttttgacatagatcatctttgttttctcttc |
32105749 |
T |
|
| Q |
715 |
attacaactagtttatcatactat |
738 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
32105750 |
attacaacaagtttatcatactat |
32105773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 32104765 - 32104922
Alignment:
| Q |
34 |
atcctcacattttcccttatcatttgcaattacttttccagctattcctttagggtataaatagagtaaataagggtacttttagaaaataaaacataac |
133 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||| ||| |||| |||| |||| |||| ||||||| || ||||||| ||||| ||||||| ||||| |
|
|
| T |
32104765 |
atcctcacattttcccataccattttcaattacttt--cagttatttcttttgggtttaaaaagagtaactatgggtactgttagagaataaaatataac |
32104862 |
T |
|
| Q |
134 |
ctttagaaaagtcaaatcaatttgaatttttaattcatatgaacatgttataatgacata |
193 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
32104863 |
ctttagaaaattcaaatcaatttgaaatttcaattcatatgaacatgttataatgacata |
32104922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 564 - 687
Target Start/End: Original strand, 32106126 - 32106249
Alignment:
| Q |
564 |
cgttatttaagaaggtgatacatgttttccaacaatcaatattggatccctaacatgatgtggagtccactactttttaagtgtgtattcggtgcaatta |
663 |
Q |
| |
|
|||||||| ||| |||||| |||||||| |||| ||||| || |||| | ||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
32106126 |
cgttatttgagacggtgatgcatgtttttcaacgatcaacataggattcaatgaatgatgtggagtccactacttttaatatgtgtattcggtgcaatta |
32106225 |
T |
|
| Q |
664 |
attaaacaataaaaactatttttt |
687 |
Q |
| |
|
|||||| ||||||||| ||||||| |
|
|
| T |
32106226 |
attaaaaaataaaaaccatttttt |
32106249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 679
Target Start/End: Original strand, 32076121 - 32076180
Alignment:
| Q |
621 |
atgtggagtccactactttttaag-tgtgtattcggtgcaattaattaaacaataaaaac |
679 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32076121 |
atgtggagtccactacttctaaatatgtgtattcggtgcaattaattaaaaaataaaaac |
32076180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 679
Target Start/End: Original strand, 32088529 - 32088590
Alignment:
| Q |
618 |
atgatgtggagtccactactttttaagtgtgtattcggtgcaattaattaaacaataaaaac |
679 |
Q |
| |
|
||||| ||||||||||||||| | | ||||||||||||||||||| |||| ||||||||| |
|
|
| T |
32088529 |
atgatatggagtccactacttctaatatgtgtattcggtgcaattaggtaaaaaataaaaac |
32088590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University