View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14546_low_10 (Length: 404)
Name: NF14546_low_10
Description: NF14546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14546_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 53492109 - 53492476
Alignment:
| Q |
17 |
aatatccaagactaattcaccaaacccaaacaaggtgaacacccattcaaaaagaaaactcaccgtaagatgaaaatccattcaaaaagaaaatgggcag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492109 |
aatatccaagactaattcaccaaacccaaacaaggtgaacacccattcaaaaagaaaactcaccgtaagatgaaaatccattcaaaaagaaaatgggcag |
53492208 |
T |
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| Q |
117 |
aattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttatataaagcttgaaagttttcattacgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492209 |
aattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttatataaagcttgaaagttttcattacgt |
53492308 |
T |
|
| Q |
217 |
tacagcagccaacacattgttataacatggaaaaaggaaaacatggtaaaaaagaaagtacctgatgaatggtgtgggatctccgaccacccatctaaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492309 |
tacagcagccaacacattgttataacatggaaaaaggaaaagatggtaaaaaagaaagtacctgatgaatggtgtgggatctccgaccacccatctaaca |
53492408 |
T |
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| Q |
317 |
gcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaataggg |
384 |
Q |
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| T |
53492409 |
acattgcaccattgattgagtttcaaaggcaagtcacgatgtccccttatccacttagagtaataggg |
53492476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 92 - 384
Target Start/End: Original strand, 53500118 - 53500396
Alignment:
| Q |
92 |
atccattcaaaaagaaaatgggcagaattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttata |
191 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| |
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| T |
53500118 |
atccattcaaaaagaaaatgtgcagaactttaaggcattatgtaagacataaaactacaacgcataatatcaatttttagaattttttaa---------- |
53500207 |
T |
|
| Q |
192 |
taaagcttgaaagttttcattacgttacagcagccaacacattgttataacatggaaaaaggaaaacatggtaaaaaagaaagtacctgatgaatggtgt |
291 |
Q |
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|||||||||||||| |||||||||| || ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
53500208 |
---agcttgaaagttttg-ttacgttacatcaaccaacacatcattataacatggaaaaaggaaaagatggtaaaaaaaaaagtacctgatgaacggtgt |
53500303 |
T |
|
| Q |
292 |
gggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaataggg |
384 |
Q |
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| T |
53500304 |
gggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaataggg |
53500396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 249 - 384
Target Start/End: Original strand, 16071454 - 16071591
Alignment:
| Q |
249 |
aaaggaaaacatggtaaaaaagaaa--gtacctgatgaatggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggc |
346 |
Q |
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||||||||||||||||||||| ||| || |||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16071454 |
aaaggaaaacatggtaaaaaaaaaaaagtgcctgattaatggtatgggatctccaaccacccatctaaccgcattgcaccattgattaagtttcaaaggc |
16071553 |
T |
|
| Q |
347 |
aagtcacgatgtccccttatccacttagagtaataggg |
384 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||| |
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| T |
16071554 |
aagtcgcggtgtccccttatccacttagagtaataggg |
16071591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 45353706 - 45353605
Alignment:
| Q |
277 |
cctgatgaatggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagag |
376 |
Q |
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|||||||||||||||||||| | || | ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45353706 |
cctgatgaatggtgtgggattgctgaactcccatctaacaacattgcaccactgattaagcttcaaaggcaagtcacgatgtccccttatccacttagag |
45353607 |
T |
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| Q |
377 |
ta |
378 |
Q |
| |
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|| |
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|
| T |
45353606 |
ta |
45353605 |
T |
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