View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14546_low_14 (Length: 322)
Name: NF14546_low_14
Description: NF14546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14546_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 1091808 - 1091534
Alignment:
| Q |
19 |
aactgacccattaattttaacgttgcagtgacttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcagataattatattgtagaaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091808 |
aactgacccattaattttaacgttgcagtgacttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcagataattatattgtagaaat |
1091709 |
T |
|
| Q |
119 |
atgttccacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttgctttgcttttgtgataaagcaggatatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091708 |
atgttccacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttgctttgcttttgtgataaagcaggatatg |
1091609 |
T |
|
| Q |
219 |
attagtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatggcggctacaaaaaccta |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
1091608 |
attagtttgcaagtttatatgctataatttcaaaagtatttgcaaaaactctgttatggcggctacaaaagccta |
1091534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 36524404 - 36524233
Alignment:
| Q |
19 |
aactgacccattaattttaacgttgcagtgacttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcagataattatattgtagaaat |
118 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |
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| T |
36524404 |
aactgacccattaattttaacattgcagtgtcttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcggatggttatatggtagaaat |
36524305 |
T |
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| Q |
119 |
atgttccacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttg |
190 |
Q |
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| T |
36524304 |
atgttccacatcgggttcaattgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttg |
36524233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 36524225 - 36524154
Alignment:
| Q |
217 |
tgattagtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatggcggctacaaaa |
288 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| || | |||||||| ||| ||||||| ||||||| |
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| T |
36524225 |
tgattagtttgcaagttcatatgctataatttcaaaactacttacaaaaactttgtgatggcggttacaaaa |
36524154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 18100466 - 18100196
Alignment:
| Q |
19 |
aactgacccattaattttaacgttgcagtgacttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcagataattatattgtagaaat |
118 |
Q |
| |
|
||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
18100466 |
aactgacccattaattttaacattgcagcgtcttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcggatgattatattgtagaaat |
18100367 |
T |
|
| Q |
119 |
atgttccacatcgggttcaactgcagaggaaactgga-ggtatcaagaataaataattcaatgaaggattttgctttgcttttgtgat-aaagcaggata |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||| ||||| |
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| T |
18100366 |
atgttccacatcgggttcaactgcagaggaaactggagggtatcaagaataaataattc-atgaagggtttttctttgcttttgtgataaaaacaggaat |
18100268 |
T |
|
| Q |
217 |
tgattagtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatggcggctacaaaa |
288 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| | |||||||| ||| ||||||||||||||| |
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|
| T |
18100267 |
tgattagtttgcaagttcatatgctataatttcaaaagtacttacaaaaactttgtgatggcggctacaaaa |
18100196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 18096169 - 18095899
Alignment:
| Q |
19 |
aactgacccattaattttaacgttgcagtgacttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcagataattatattgtagaaat |
118 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
18096169 |
aactgacccattaattttaacattgcagcctcttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcggatgattatattgtagaaat |
18096070 |
T |
|
| Q |
119 |
atgttccacatcgggttcaactgcagaggaaactgga-ggtatcaagaataaataattcaatgaaggattttgctttgcttttgtgat-aaagcaggata |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||| ||||| |
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| T |
18096069 |
atgttccacatcgggttcaactgcagaggaaactggagggtatcaagaataaataattc-atgaagggtttttctttgcttttgtgataaaaacaggaat |
18095971 |
T |
|
| Q |
217 |
tgattagtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatggcggctacaaaa |
288 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| | |||||||| ||| ||||||||||||||| |
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| T |
18095970 |
tgattagtttgcaagttcatatgctataatttcaaaagtacttacaaaaactttgtgatggcggctacaaaa |
18095899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 7707428 - 7707531
Alignment:
| Q |
102 |
aattatattgtagaaatatgttccacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttgctttgcttttg |
201 |
Q |
| |
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|||||| ||||| |||||||| ||| ||| | |||| | | |||||||||||| |||| ||||| || |||||||||||| ||||| |||| |||||| |
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| T |
7707428 |
aattatgttgtacaaatatgtaccaaatcagtttcagccgaagaggaaactggtggtaataagaaaaagtaattcaatgaataatttttctttccttttg |
7707527 |
T |
|
| Q |
202 |
tgat |
205 |
Q |
| |
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|||| |
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|
| T |
7707528 |
tgat |
7707531 |
T |
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