View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14546_low_16 (Length: 311)
Name: NF14546_low_16
Description: NF14546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14546_low_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 57 - 311
Target Start/End: Original strand, 1091323 - 1091577
Alignment:
| Q |
57 |
ttgagcaacatgtcttttttctaaaattctacggctattttaaaacataaaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagcat |
156 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091323 |
ttgagcaacatgtcttttttctaaaattctacggcttttttaaaacataaaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagcat |
1091422 |
T |
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| Q |
157 |
aataagatccaacatttaattctcaatacatgccaaatcataactttaatctacaaataagatcaataattctcaagcgaagatacaaaaataacaataa |
256 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091423 |
aataagatgcaacatttaattctcaatacatgccaaatcataacttcaatctacaaataagatcaataattctcaagcgaagatacaaaaataacaataa |
1091522 |
T |
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| Q |
257 |
caataacaaaataggcttttgtagccgccacaacagagtttttgcagatactttt |
311 |
Q |
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| T |
1091523 |
caataacaaaataggcttttgtagccgccataacagagtttttgcaaatactttt |
1091577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 60 - 300
Target Start/End: Original strand, 36523952 - 36524181
Alignment:
| Q |
60 |
agcaacatgtcttttttctaaaattctacggctattttaaaacataaaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagcataat |
159 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523952 |
agcaacatgtcttttttctaaaattctacggct-ttttaaaa------aaatatagaacctaagtgaccaaatgactcattaattgagtacaagcataat |
36524044 |
T |
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| Q |
160 |
aagatccaacatttaattctcaatacatgccaaatcataactttaatctacaaataagatcaataattctcaagcgaagatacaaaaataacaataacaa |
259 |
Q |
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| T |
36524045 |
aagatccaacatttaattctcaatacatgccaaatcagaacttcaatcaacaaataagataaataattctcaaccgaagatacaaaaataacaataacaa |
36524144 |
T |
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| Q |
260 |
taacaaaataggcttttgtagccgccacaacagagtttttg |
300 |
Q |
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|||| ||||||||||| |||||| ||| |||||||| |
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| T |
36524145 |
----aaaaaaggcttttgtaaccgccatcacaaagtttttg |
36524181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 12820938 - 12820811
Alignment:
| Q |
131 |
atgactcattaattgagtacaagcataataagatccaacatttaattctcaatacatgccaaatcataactttaatctacaaataagatcaataattctc |
230 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||||||||| |
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| T |
12820938 |
atgactcattaattgagcacaaacataataagatccaacatttaattctcaatacataccaaatcagaactttaaccaacaaataagatcaataattctc |
12820839 |
T |
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| Q |
231 |
aagcgaagatacaaaaataacaataaca |
258 |
Q |
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| T |
12820838 |
aaacgaagatacaagagtaacaataaca |
12820811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 18099999 - 18100125
Alignment:
| Q |
57 |
ttgagcaacatgtcttttttctaaaattctacggctattttaaaacata--aaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagc |
154 |
Q |
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||||| |||||||||||||||||||||| ||||||| || ||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||| |
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| T |
18099999 |
ttgaggaacatgtcttttttctaaaattatacggcttttataaaacatataaaaaatataaaacctaagtgaccaaataactcatgaattgagtacaagc |
18100098 |
T |
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| Q |
155 |
ataataagatccaacatttaattctca |
181 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
18100099 |
ataataagatccaacattcaattctca |
18100125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 18095702 - 18095828
Alignment:
| Q |
57 |
ttgagcaacatgtcttttttctaaaattctacggctattttaaaacata--aaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagc |
154 |
Q |
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||||| |||||||||||||||||||||| |||| || || ||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||| |
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| T |
18095702 |
ttgaggaacatgtcttttttctaaaattatacgacttttataaaacatataaaaaatataaaacctaagtgaccaaataactcatgaattgagtacaagc |
18095801 |
T |
|
| Q |
155 |
ataataagatccaacatttaattctca |
181 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
18095802 |
ataataagatccaacattcaattctca |
18095828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 18095841 - 18095926
Alignment:
| Q |
209 |
acaaataagatcaataattctcaagcgaagatacaaaaataacaataacaataacaaaataggcttttgtagccgccacaacagagtttttg |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||| |
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| T |
18095841 |
acaaataagatcaataattctcagccgaagatacaaaaata------acaataacaaaaaaggcttttgtagccgccatcacaaagtttttg |
18095926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 18100138 - 18100223
Alignment:
| Q |
209 |
acaaataagatcaataattctcaagcgaagatacaaaaataacaataacaataacaaaataggcttttgtagccgccacaacagagtttttg |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||| |
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| T |
18100138 |
acaaataagatcaataattctcagccgaagatacaaaaata------acaataacaaaaaaggcttttgtagccgccatcacaaagtttttg |
18100223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 256
Target Start/End: Complemental strand, 7709089 - 7708941
Alignment:
| Q |
113 |
tagaacctaagtgaccaaatgactcattaa-ttgagtacaagcataataagatccaacatttaattctcaatacatgccaaatcataactttaatctac- |
210 |
Q |
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|||||||||| ||||||||| ||||||||| |||||| || | |||| ||||||||||| ||| |||||||| || ||||||||||||||||| || |
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| T |
7709089 |
tagaacctaactgaccaaataactcattaaattgagttcatgtctaattagatccaacatgtaactctcaatatatatcaaatcataactttaataaaca |
7708990 |
T |
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| Q |
211 |
---aaataagatcaataattctcaagcgaagatacaaaaataacaataa |
256 |
Q |
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|||| || |||||||||||||| | ||||||| ||||||||||||| |
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| T |
7708989 |
gataaattagttcaataattctcaaacaaagatacgaaaataacaataa |
7708941 |
T |
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