View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14546_low_19 (Length: 298)
Name: NF14546_low_19
Description: NF14546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14546_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 48445458 - 48445175
Alignment:
| Q |
1 |
gtttatcagtcatgttgaagttaagattcttgactcctctttccatcacaaatttaagaattctatcaaattgtctttggttgaagcgagaagagtgact |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48445458 |
gtttatcagtcatgttgaacttaagattcttgactcctctttccatcacaaatttaagaattctatcaaattgtctttggtcgaagcgagaagagtgact |
48445359 |
T |
|
| Q |
101 |
taatttgaaggtaaacgagtagatatcagnnnnnnngtctcgcaaccggaacatggctaagtcaacaaatctgcgaaagctgttgaagtctgggaaggtt |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48445358 |
taatttgaaggtaaacgaatagatatcagtttttttgtctcgcaaccggaacatggctaagtcaacaaatctgcgaaagctgttgaagtctgggaaggtt |
48445259 |
T |
|
| Q |
201 |
ttgtcgtcaaaatcaagagtgaacaccgagcgccataccggtttccatctcttagaaagtatagttgtggttacagcaagtttg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48445258 |
ttgtcgtcaaaatcaagagtgaacaccgagcgccataccggtttccatctcttagaaagtatagttgtggttacagcaagtttg |
48445175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 7175922 - 7175966
Alignment:
| Q |
2 |
tttatcagtcatgttgaagttaagattcttgactcctctttccat |
46 |
Q |
| |
|
|||| ||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
7175922 |
tttaccagacatgtcgaagttaagattctcgactcctctttccat |
7175966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 47368769 - 47368829
Alignment:
| Q |
2 |
tttatcagtcatgttgaagttaagattcttgactcctctttccatcacaaatttaagaatt |
62 |
Q |
| |
|
|||| ||| ||||| ||||||||||| || || ||||| ||||||||||||||||| |||| |
|
|
| T |
47368769 |
tttaccagacatgtcgaagttaagatactcgattcctcgttccatcacaaatttaaaaatt |
47368829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University