View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14546_low_25 (Length: 270)
Name: NF14546_low_25
Description: NF14546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14546_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 26316384 - 26316293
Alignment:
| Q |
160 |
gtgaagattcatgttaacgcaatgtcatggaatgaagatcgactagaccttagaactaacaatttcttctttataagaaagaaataaaccgac |
252 |
Q |
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| T |
26316384 |
gtgaagattcatgttaacgcaatgtcatggaatgaagatcgactagaccttagaactaacaatttcttc-ttataataaagaaataaaccgac |
26316293 |
T |
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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 26316799 - 26316723
Alignment:
| Q |
12 |
tttatgttgacctaaattctaacaataactcgacaactagccaccatccaaataaagaaatatattaagcaacatac |
88 |
Q |
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| T |
26316799 |
tttatgtagacctaaattctaacaataactcgacaactagccaccatccaaataaagaaatatattaaggaacatac |
26316723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 26311156 - 26311031
Alignment:
| Q |
84 |
catacctcaataggagtacc--ggggggatataaggacctctatcttaaaggacgatccgtccaccatcgagaaccccgtgaagattcatgttaacgcaa |
181 |
Q |
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| T |
26311156 |
catacctcaataggagtaccaagagggaatataagaacctctatcttaaaagatgatctgtccaccatcgggaacctcatga-gattcatgttaacacaa |
26311058 |
T |
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| Q |
182 |
tgtcatggaatgaagatcgactagacc |
208 |
Q |
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| T |
26311057 |
tgccatggaatgaagatcgactagacc |
26311031 |
T |
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