View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14546_low_6 (Length: 535)
Name: NF14546_low_6
Description: NF14546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14546_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 253 - 520
Target Start/End: Complemental strand, 53660208 - 53659940
Alignment:
| Q |
253 |
tgttcgtcctaacgaaataagtatctcactgannnnnnngtgacataggtcacattgaccaaatcgcgtaaacttttgtgtcttgttctttcctcttttt |
352 |
Q |
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| T |
53660208 |
tgttcgtcctaacgaaataagtatctcactgatttctttgtgacgtaggtcacattgaccaaatcgcgtaaacttttgtgtcttgttctttcctcttttt |
53660109 |
T |
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| Q |
353 |
cctttgatcttccaacttgtgtgtggtttattcttgtctttg-tcaaaacaattacaactaatttgtgatctctcttacatatgaaaggttattgagcat |
451 |
Q |
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| T |
53660108 |
cctttgatcttccgacttgtgtgtggtttattcttgtctttggtcaaaacaattacaactaatttgtgatctctcttacatatgaaaggttattgagcat |
53660009 |
T |
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| Q |
452 |
aaaccttatgatcacaaagctgatgtctttagctttgcaattgttctctgggagctgcttacaagaaag |
520 |
Q |
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| T |
53660008 |
aaaccatatgatcacaaagctgatgtctttagctttgcaattgttctctgggagctgcttacaagaaag |
53659940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 53660485 - 53660244
Alignment:
| Q |
15 |
catagggttggttacttctaaatttttaaatgtataacctacaggtttggatgaggaagtttaagacgaacctagacaagttggaatgagaatgacggct |
114 |
Q |
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| T |
53660485 |
catagggttggttacttctaaattttaaaatgtataacctacaggtttggatgaggaagtttaagacgaacctagactagttggaatgagaatgacggct |
53660386 |
T |
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| Q |
115 |
tttatgctgaaaattgaataattggaactgaatatctattaaagctaacatgaattttagnnnnnnncgttgcttatacgctttgcaaatagataataac |
214 |
Q |
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| T |
53660385 |
tttatgctgaaaattgaataattggaactgaatatctattaaagctaacatgaattttagtttttttcgttgcttatacgctttgcaaatagataataac |
53660286 |
T |
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| Q |
215 |
aattttgttccctattttataaacctcaccatctctcttgtt |
256 |
Q |
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| T |
53660285 |
aattttgttccctattttataaacctcaccctctctcttgtt |
53660244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 520
Target Start/End: Complemental strand, 8449516 - 8449432
Alignment:
| Q |
436 |
aaaggttattgagcataaaccttatgatcacaaagctgatgtctttagctttgcaattgttctctgggagctgcttacaagaaag |
520 |
Q |
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| T |
8449516 |
aaaggttattgagcataagccatataaccagaaagctgatgttttcagctttgggattattatttgggagctgctcacaagaaag |
8449432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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