View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14546_low_7 (Length: 505)
Name: NF14546_low_7
Description: NF14546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14546_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 2599482 - 2599972
Alignment:
| Q |
1 |
agtgcatatttgaatcgatgatgaatttagcaaaaccacagtgac----caccgtgattttgacaaaagtcacacacccaaactcaaacaaaattatagt |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2599482 |
agtgcatatttgaatcgatgatgaatttagcaaaaacacagtgacacaccaccgtgattttgacaaaagtcacacacccaaactcaaacaaaattatagt |
2599581 |
T |
|
| Q |
97 |
attatactataatttcatgcaagtcggtgtaatttcaatcgtgcactgaaacaataagtaaaataaagacaacaatgaaagtagtagtaacatatgtatt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
2599582 |
attatactataatttcatgcaagtcggtgtaatttcaatcgtgcacagaaacaataagtaaaataaaaacaacaatgaaagtagtagtaacataagtatt |
2599681 |
T |
|
| Q |
197 |
ggtatggcttgaacctttcacatgaaactctatgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggca |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2599682 |
ggtatggcttgaacctttcacatgaaactctatgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggca |
2599781 |
T |
|
| Q |
297 |
cattcaagttgataccaagaacattagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgct |
396 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2599782 |
cattcaagttgataccaagaacgttagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacaattgct |
2599881 |
T |
|
| Q |
397 |
tgaagcaggacttccaacaataacgttaacaagtcctagaacatcagcacaaacacctagctttaatgtgtcactagggcatttttgtgct |
487 |
Q |
| |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2599882 |
tgaagcaggaattccaacaataacattaacaagtcctagaacatcagcacatacacctagctttaatgtgtcactagggcatttttgtgct |
2599972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 83 - 487
Target Start/End: Original strand, 2578068 - 2578469
Alignment:
| Q |
83 |
aacaaaattatagtattatactataatttcatgcaagtcggtgtaatttcaatcgtgcactgaaacaataagtaaaataaagacaacaatgaaagtagta |
182 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||| | |||||||||||| | ||| ||||| ||||||||||||| || | |||||||||| | |
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|
| T |
2578068 |
aacaaaattatagtatta--ctataatttcgttaaagccaccgtaatttcaatcatacacataaacattaagtaaaataaaaacgataatgaaagtatt- |
2578164 |
T |
|
| Q |
183 |
gtaacatatgtattggtatggcttgaacctttcacatgaaactctatgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagact |
282 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2578165 |
gtaacataagtattggtatggcttgaacctttcacatgaaactctatgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagact |
2578264 |
T |
|
| Q |
283 |
aagtgtgacaggcacattcaagttgataccaagaacattagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaat |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2578265 |
aagtgtgacaggcacattcaagttgataccaagaacgttagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaat |
2578364 |
T |
|
| Q |
383 |
gtacaacatttgcttgaagcaggacttccaacaataacgttaacaagtcctagaacatcagcacaaacacctagctttaatgtgtcactagggcattttt |
482 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2578365 |
gtacaacagttgcttgaagcaggacttccaacaataacattaacaagtcctagaacatcagcacatacacctagctttaatgtgtcactagggcattttt |
2578464 |
T |
|
| Q |
483 |
gtgct |
487 |
Q |
| |
|
||||| |
|
|
| T |
2578465 |
gtgct |
2578469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 131 - 485
Target Start/End: Original strand, 2591855 - 2592216
Alignment:
| Q |
131 |
tcaatcgtgcactgaaacaataagtaaaataaagacaacaatgaaagtagtagtaacatatgtattggtatggctt-gaacctttcacatga------aa |
223 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| || | ||||||||||||||||||||| ||| | ||||||||| ||||||||||||||| || |
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|
| T |
2591855 |
tcaatcgtgcacataaacaagaagtaaaataaaaacgataatgaaagtagtagtaacataagtactcgtatggctttgaacctttcacatgaagatgaaa |
2591954 |
T |
|
| Q |
224 |
ctctatgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacattag |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2591955 |
ctctatgaacattggaaaccattaggaacagatttttcacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacattag |
2592054 |
T |
|
| Q |
324 |
ccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgcttgaagcaggacttccaacaataacgtt |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
2592055 |
ccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacacttgcttgaagcaggacttccaacaataacatt |
2592154 |
T |
|
| Q |
424 |
aacaagtcctagaacatcagcacaaacacctagctttaatgtgtcactagggcatttttgtg |
485 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2592155 |
aacaagtcctagaacatcagcacatacacctagctttaatgtgtcactaggacatttttgtg |
2592216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 181 - 485
Target Start/End: Original strand, 2608202 - 2608506
Alignment:
| Q |
181 |
tagtaacatatgtattggtatggcttgaacctttcacatgaaactctatgaacattggaaaccattaggaacagatttttgacaagcactaagtaggaga |
280 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
2608202 |
tagtaacataagtattagtatggtttgaacctttgacatgaaagtctatgaacattggaaacctgaaggaacagatttttcacaagcactaagtaggaga |
2608301 |
T |
|
| Q |
281 |
ctaagtgtgacaggcacattcaagttgataccaagaacattagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatca |
380 |
Q |
| |
|
|| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| || |||||| |||||||||||| || |
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|
| T |
2608302 |
ctgagtgtgataggaacattcaagttgataccaagaacattagccttaatagcagtacaaaggcaaattgctgcatctaaatcaaccaaaccttgaagca |
2608401 |
T |
|
| Q |
381 |
atgtacaacatttgcttgaagcaggacttccaacaataacgttaacaagtcctagaacatcagcacaaacacctagctttaatgtgtcactagggcattt |
480 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2608402 |
atgcacaacacttgcttgaagcaggacttccaacaataacattaacaagtcctaaaacatcagcacaaacacctagctttaatgtgtcactaggacattt |
2608501 |
T |
|
| Q |
481 |
ttgtg |
485 |
Q |
| |
|
||||| |
|
|
| T |
2608502 |
ttgtg |
2608506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 2591743 - 2591835
Alignment:
| Q |
3 |
tgcatatttgaatcgatgatgaatttagcaaaaccacagtga-ccaccgtgattttgacaaaagtcacacacccaaactcaaacaaaattata |
94 |
Q |
| |
|
||||||||||||| ||||||||||||| | ||| ||| |||| |||| ||||||||||||||| ||| || |||| || |||||||||||| |
|
|
| T |
2591743 |
tgcatatttgaattgatgatgaatttaactaaatcacggtgatacaccatgattttgacaaaagccacgcattcaaaatccaacaaaattata |
2591835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 479
Target Start/End: Complemental strand, 49329233 - 49328983
Alignment:
| Q |
232 |
acattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacattagccttaata |
331 |
Q |
| |
|
||||||||||||| ||| || | ||||||||| |||||||| || | || || |||| ||||||||||| |||||| ||||| || |||||||||| |
|
|
| T |
49329233 |
acattggaaaccaggagggacggttttttgacatgcactaaggagcaagctgagagtgataggcacattcaggttgatcccaagcacgttagccttaagt |
49329134 |
T |
|
| Q |
332 |
gcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgct---tgaagcaggacttccaacaataacgttaacaa |
428 |
Q |
| |
|
|| || |||||||||| ||| || ||||||||||||||||| | |||||||| ||||||||| || ||||| |||| |||||| || ||| ||||| | |
|
|
| T |
49329133 |
gcagtgcaaagacaaagtgcagcctccaaatcagccaaacccttaatcaatgcacaacatttactacctgaaggaggatttccaataacaacattaacca |
49329034 |
T |
|
| Q |
429 |
gtcctagaacatcagcacaaacacctagctttaatgtgtcactagggcatt |
479 |
Q |
| |
|
|||| || |||||||||||| ||||||||||| || || ||||||||| |
|
|
| T |
49329033 |
accctaaaagatcagcacaaacccctagctttaaggtatccttagggcatt |
49328983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 462
Target Start/End: Complemental strand, 49331442 - 49331276
Alignment:
| Q |
299 |
ttcaagttgataccaagaacattagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgct-- |
396 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||| || || |||||||||| ||| || ||||||||||||||||||| || | || |||||| || || |
|
|
| T |
49331442 |
ttcaagtttattccaagcacattggccttaattgcagtgcaaagacaaagtgcagcatccaaatcagccaaacctttgattattgcacaacaattactac |
49331343 |
T |
|
| Q |
397 |
-tgaagcaggacttccaacaataacgttaacaagtcctagaacatcagcacaaacacctagctttaa |
462 |
Q |
| |
|
|||||||||| ||||||||| ||| ||||| ||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
49331342 |
ctgaagcaggatttccaacaacaacattaaccagtcctaaaacatcagcacaaacccctaactttaa |
49331276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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