View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14546_low_8 (Length: 494)
Name: NF14546_low_8
Description: NF14546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14546_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 36794313 - 36794778
Alignment:
| Q |
19 |
taataagatttgtaaaattgtaactaatacacctaaaaatgctaacctggacaactccaacaagaggcgcggaaggtacatctccgaaaatatgaatagc |
118 |
Q |
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| T |
36794313 |
taataagatttgtaaaattgtaactaatacacccaaaaatgctaacctggacaactccaacaagaggcgcggaaggtacatctccgaaaatatgaatagc |
36794412 |
T |
|
| Q |
119 |
tacagtagacatagccattgatagtggcctcaaacttggcttaacacaatggagacatacaaaattcacgggaccctgaaagaaaaaatagtaagaatat |
218 |
Q |
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| T |
36794413 |
tacagtagacatagccattgatagtggcctcaaacttggcttaacacaatggagacatacaaaattcacgggaccctgaaagaaaaaatagtaagaatat |
36794512 |
T |
|
| Q |
219 |
acgaataatacaatatatggaacaaatttatgctttccgagtttttatcaggtacacataacggtacttaataataaattctaatgactataagctatct |
318 |
Q |
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| T |
36794513 |
acgaataatacaatatatggaacaaatttatgctttccaagtttttatcaggtacacataacggtacttaataataaattctaatgactataagctatct |
36794612 |
T |
|
| Q |
319 |
tagcttgtaaataaaaatacagtaacaaaaatcatataatctaagac-ttttttgtgaacnnnnnnnngtgtttggatacaccatctctacattctacat |
417 |
Q |
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| T |
36794613 |
tagcttgtaaataaaaatacagtaacaaaaatcatataatctaagactttttttgtgaacaaaaaaaagtgtttggatacaccatctccacattctacat |
36794712 |
T |
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| Q |
418 |
catcattttgatatcaaaattcacaaactagaattcttgtttgtcaaaatcacattattcctcaat |
483 |
Q |
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| T |
36794713 |
catcattttgatatcaaaattcacaaactagaattcatgtttgtcaaaaacacattattcctcaat |
36794778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 2348192 - 2348059
Alignment:
| Q |
54 |
aaaatgctaacctggacaactccaacaagaggcgcggaaggtacatctccgaaaatatgaatagctacagtagacatagccattgatagtggcctcaaac |
153 |
Q |
| |
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|||| ||| ||||||| |||||| |||||||| | |||||| |||||||| || | |||||| || ||||||||||| ||||| |||||||||||||||| |
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| T |
2348192 |
aaaaggctgacctggagaactccgacaagaggtgaggaaggcacatctccaaagagatgaatggcaacagtagacatggccatggatagtggcctcaaac |
2348093 |
T |
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| Q |
154 |
ttggcttaacacaatggagacatacaaaattcac |
187 |
Q |
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| T |
2348092 |
ttggtttaacacaatggagacatacataattcac |
2348059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 2340318 - 2340173
Alignment:
| Q |
54 |
aaaatgctaacctggacaactccaacaagaggcgcggaaggtacatctccgaaaatatgaatagctacagtagacatagccattgatagtggcctcaaac |
153 |
Q |
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|||| ||| ||||||| |||||||||||| || | |||||| |||||||| || | |||||| || ||||||||||| || || |||| |||||||||| |
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| T |
2340318 |
aaaaggctgacctggagaactccaacaagtggtgaggaaggcacatctccaaagagatgaatggcaacagtagacatggcgatggataaaggcctcaaac |
2340219 |
T |
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| Q |
154 |
ttggcttaacacaatggagacatacaaaattcacgggaccctgaaa |
199 |
Q |
| |
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|||| ||||||||||| ||||||||| ||||||| ||||||||||| |
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| T |
2340218 |
ttggtttaacacaatgaagacatacataattcaccggaccctgaaa |
2340173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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