View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14547_low_1 (Length: 568)
Name: NF14547_low_1
Description: NF14547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14547_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 23 - 418
Target Start/End: Complemental strand, 26310255 - 26309859
Alignment:
| Q |
23 |
agacccttacaatggaaaatatcaacggctgagattaaacttagggtttgatcaggatttcttaaagttatatccctttgatgatgagaggagaaagagt |
122 |
Q |
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| T |
26310255 |
agacccttacaatggaaaatatcaacggctgagattaaacttagggtttgatcaggatttcttaaagttatatccctttgatgatgagaggagaaag--t |
26310158 |
T |
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| Q |
123 |
ctgcaaagaaagagcgggagccattagggaaggttgagattacttgttaaacacgttcagtgttggtgggtggccagatggagtggcacatgatggccca |
222 |
Q |
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| T |
26310157 |
ctgcaaagaaagagcgggagccattagggaaggttgagattacttgttgaacacgttcagtgttggtggatggctagatggagtggcacatgttggccca |
26310058 |
T |
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| Q |
223 |
tagatgttcattggtac--atagagagttgaattgggagcaggtgcttgcggcggaagcgagagcggccccgtcaaggcgtgtgagtatgtgagcttgga |
320 |
Q |
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| T |
26310057 |
tagatgttcattggaacagagagagagttgagttgggagcaggtgcttgcggcggaagcgagagcggccccgtcaaggcgtgtgagtatgtgagcttgga |
26309958 |
T |
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| Q |
321 |
ttatgtcgtc-------gcggagaatgtggctgtttcagtctcctctgattcaccggtaatgcaattgcaaatcatgatagcgtatatagtatagctata |
413 |
Q |
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| T |
26309957 |
ttatgtcgtcgtggacggcggagaatgtcgttgtttcagcctcctctgattcaccggtaa------tgcaaatcatgatagcgtatatagtatagctata |
26309864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 35 - 328
Target Start/End: Complemental strand, 25783094 - 25782801
Alignment:
| Q |
35 |
tggaaaatatcaacggctgagattaaacttagggtttgatcaggatttcttaaagttatatccctttgatgatgagaggagaaagagtctgcaaagaaag |
134 |
Q |
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| T |
25783094 |
tggaaaatatcaacggctgagattaaacttagggtttcgtcatgatttgttaaagtcatatccctttgatgatgagaggagaaagagtctgcaaagaaag |
25782995 |
T |
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| Q |
135 |
agcgggagccattagggaaggttgagattacttgttaaacacgttcagtgttggtgggtggccagatggagtggcacatgatggcccatagatgttcatt |
234 |
Q |
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| T |
25782994 |
agcggaagccatttgggaagtttgagattacttgctgaacacgttcagtgttggtggaaggccaagtggagtggcacatgttagcccatagatgttcatt |
25782895 |
T |
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| Q |
235 |
ggtacatagagagttgaattgggagcaggtgcttgcggcggaagcgagagcggccccgtcaaggcgtgtgagtatgtgagcttggattatgtcg |
328 |
Q |
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| T |
25782894 |
ggtacatagagagttgaattgggagcaggtgcttgcggcggaagcaagagcaggaccgtcgagacgggtgagtatgtgtgtttggattatgtcg |
25782801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 462 - 529
Target Start/End: Complemental strand, 26309880 - 26309813
Alignment:
| Q |
462 |
tatatagtatagctatatttttgcataagtataatatggtgtttcattgtaagatgaactctatctta |
529 |
Q |
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| T |
26309880 |
tatatagtatagctatatttttgcataagtataatatggtgtttcattgtaagatgaactctatctta |
26309813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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