View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14547_low_3 (Length: 386)

Name: NF14547_low_3
Description: NF14547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14547_low_3
NF14547_low_3
[»] chr4 (22 HSPs)
chr4 (18-173)||(9279702-9279857)
chr4 (241-350)||(24575154-24575263)
chr4 (241-350)||(9279925-9280034)
chr4 (241-349)||(47498838-47498946)
chr4 (257-350)||(7700297-7700390)
chr4 (241-346)||(42414550-42414655)
chr4 (241-330)||(46251940-46252029)
chr4 (241-346)||(3756963-3757068)
chr4 (241-350)||(18780926-18781035)
chr4 (18-106)||(30542281-30542369)
chr4 (241-330)||(34276948-34277037)
chr4 (241-305)||(47997031-47997095)
chr4 (241-330)||(42429989-42430078)
chr4 (241-330)||(24859008-24859097)
chr4 (241-301)||(37602649-37602709)
chr4 (257-319)||(6184090-6184152)
chr4 (251-301)||(31568178-31568228)
chr4 (241-350)||(7611686-7611794)
chr4 (241-330)||(20580592-20580681)
chr4 (241-324)||(56078437-56078520)
chr4 (241-335)||(24319042-24319136)
chr4 (257-330)||(40436458-40436531)
[»] chr7 (12 HSPs)
chr7 (241-350)||(1575843-1575952)
chr7 (241-330)||(27392591-27392680)
chr7 (241-349)||(323603-323711)
chr7 (241-330)||(28694688-28694777)
chr7 (241-326)||(36482646-36482731)
chr7 (241-346)||(6714212-6714317)
chr7 (18-110)||(12837306-12837398)
chr7 (242-326)||(36582534-36582618)
chr7 (241-349)||(10286414-10286515)
chr7 (241-330)||(31280189-31280278)
chr7 (241-289)||(8937846-8937894)
chr7 (241-279)||(29988049-29988087)
[»] chr5 (15 HSPs)
chr5 (241-350)||(40987340-40987449)
chr5 (241-340)||(13554768-13554867)
chr5 (241-349)||(33160518-33160626)
chr5 (241-330)||(13521491-13521580)
chr5 (241-330)||(27110655-27110744)
chr5 (241-328)||(41061203-41061290)
chr5 (241-323)||(1495912-1495994)
chr5 (18-110)||(21610157-21610249)
chr5 (241-339)||(12291376-12291474)
chr5 (248-343)||(20210050-20210145)
chr5 (275-342)||(25932182-25932249)
chr5 (241-346)||(35449648-35449752)
chr5 (241-330)||(42716135-42716224)
chr5 (241-325)||(4986181-4986265)
chr5 (241-285)||(7946536-7946580)
[»] chr8 (17 HSPs)
chr8 (241-350)||(43620036-43620145)
chr8 (241-350)||(26721155-26721264)
chr8 (257-350)||(1265121-1265214)
chr8 (241-330)||(6345305-6345394)
chr8 (241-350)||(13470864-13470973)
chr8 (241-330)||(31127268-31127357)
chr8 (241-330)||(37948952-37949041)
chr8 (241-349)||(4602596-4602704)
chr8 (241-341)||(32906903-32907003)
chr8 (241-325)||(26721290-26721374)
chr8 (241-346)||(4267345-4267450)
chr8 (241-330)||(3106183-3106272)
chr8 (241-350)||(42200065-42200174)
chr8 (241-350)||(10183231-10183339)
chr8 (246-325)||(27808983-27809062)
chr8 (241-336)||(3773822-3773915)
chr8 (290-330)||(40619728-40619768)
[»] chr6 (7 HSPs)
chr6 (241-350)||(7608279-7608388)
chr6 (241-349)||(21946710-21946818)
chr6 (241-330)||(16705374-16705456)
chr6 (241-336)||(3901145-3901240)
chr6 (241-319)||(10484409-10484487)
chr6 (241-322)||(10386152-10386232)
chr6 (246-330)||(33747876-33747960)
[»] chr2 (9 HSPs)
chr2 (241-350)||(16672012-16672122)
chr2 (241-349)||(18511557-18511658)
chr2 (241-327)||(21352330-21352416)
chr2 (247-350)||(7753802-7753902)
chr2 (241-346)||(42295812-42295916)
chr2 (241-281)||(10997252-10997292)
chr2 (241-325)||(22596075-22596159)
chr2 (252-325)||(34439851-34439924)
chr2 (18-109)||(45305541-45305630)
[»] chr3 (13 HSPs)
chr3 (257-350)||(37282644-37282737)
chr3 (241-349)||(32055869-32055977)
chr3 (257-350)||(19636545-19636638)
chr3 (241-349)||(25706301-25706410)
chr3 (241-346)||(1030461-1030566)
chr3 (241-350)||(19997374-19997484)
chr3 (241-350)||(29283000-29283104)
chr3 (257-325)||(39717244-39717312)
chr3 (299-350)||(48973739-48973790)
chr3 (23-110)||(53101250-53101337)
chr3 (241-350)||(27167802-27167910)
chr3 (241-305)||(40166829-40166893)
chr3 (252-330)||(48085314-48085392)
[»] chr1 (12 HSPs)
chr1 (241-326)||(14461716-14461801)
chr1 (241-330)||(5559393-5559482)
chr1 (18-106)||(48915745-48915833)
chr1 (253-350)||(24063911-24064008)
chr1 (241-336)||(41198518-41198613)
chr1 (241-346)||(24614743-24614848)
chr1 (241-330)||(41074903-41074992)
chr1 (241-343)||(7004675-7004777)
chr1 (241-331)||(33719608-33719698)
chr1 (241-336)||(16902572-16902667)
chr1 (241-329)||(28655580-28655668)
chr1 (290-330)||(11956335-11956375)
[»] scaffold0034 (1 HSPs)
scaffold0034 (241-323)||(47780-47862)
[»] scaffold0717 (1 HSPs)
scaffold0717 (241-325)||(5490-5574)
[»] scaffold0396 (1 HSPs)
scaffold0396 (257-346)||(1267-1356)
[»] scaffold0140 (1 HSPs)
scaffold0140 (241-326)||(15490-15575)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 9279702 - 9279857
Alignment:
Q  18 gtgactaatttatttctctattaaatttttctaattgtgagagcgtgctcaaatatttttcagttaggtttgtgtcaatagaaaagttgctcccaattta 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9279702 gtgactaatttatttctctattaaatttttctaattgtgagtgcgtgcccaaatatttttcagttaggtttgtgtctatagaaaagttgctcccaattta 9279801  T
Q  118 tatctctctagctttgtatgcaaacatgattaaccaacggtagcttctggggtgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9279802 tatctctctagctttgtatgcaaacatgattaaccaacggtagcttctggggtgtt 9279857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 241 - 350
Target Start/End: Complemental strand, 24575263 - 24575154
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24575263 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaacc 24575164  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  24575163 gcaaaagtaa 24575154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 9279925 - 9280034
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  9279925 aatatttttggatttgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaacctaacctaacc 9280024  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  9280025 gcaaaagtaa 9280034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 241 - 349
Target Start/End: Complemental strand, 47498946 - 47498838
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  | |||| |||||||||||||||| |||||||||    
T  47498946 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgattggttcggatttcggatcacctttttaaaaccgaaccgaaccgaaccgaacc 47498847  T
Q  341 gcaaaagta 349  Q
    |||||||||    
T  47498846 gcaaaagta 47498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 257 - 350
Target Start/End: Original strand, 7700297 - 7700390
Alignment:
Q  257 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaaccgcaaaagtaa 350  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||| |||| |||||||||    
T  7700297 tttggatgttgttttagaaaaaccgctatgatcggatcgaatttcagattgcgttttcaaaactgaaccgaaccaaaccaaaccacaaaagtaa 7700390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 42414655 - 42414550
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||  | |||||||||||||||| |||| |||||||||    
T  42414655 aatatatttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcggattttggatcactttttcaaaaccgaaccaaaccgaaccgaacc 42414556  T
Q  341 gcaaaa 346  Q
    ||||||    
T  42414555 gcaaaa 42414550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 46252029 - 46251940
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||  | |||||||||||||||||||||    
T  46252029 aatatttttggatgtgtttggatgttgttttggaaaagccgctatgattggttcggatttcggatcaccttttcaaaaccgaaccgaacc 46251940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 3756963 - 3757068
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||| |||||||| ||||| ||||||||||  |||||||| || ||||||||||||||||||||  | |||||||||||||||| |||| || ||||||    
T  3756963 aatatgtttggatgcgtttgaatgttgttttttaaaaaccgttaagatcggatcggatttcggatcactttttcaaaaccgaaccaaaccgaatcgaacc 3757062  T
Q  341 gcaaaa 346  Q
    ||||||    
T  3757063 gcaaaa 3757068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 350
Target Start/End: Complemental strand, 18781035 - 18780926
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    |||||||||||||||||||| || ||||||||||||||||| ||||||| |||| ||||||| ||| | |||||||||   || ||||| ||||  ||||    
T  18781035 aatatttttggatgtgtttgaattttgttttggaaaaaccgttatgatcagatcagatttcgaattacgttttcaaaataaaatcgaactaaactaaacc 18780936  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  18780935 gcaaaagtaa 18780926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 30542281 - 30542369
Alignment:
Q  18 gtgactaatttatttctctattaaatttttctaattgtgagagcgtgctcaaatatttttcagttaggtttgtgtcaatagaaaagttg 106  Q
    |||||||||||||||||||||||||||||| |||||||||| | ||||| |||| ||||||| || |||||||||  |||||| |||||    
T  30542281 gtgactaatttatttctctattaaatttttttaattgtgagtgtgtgcttaaatgtttttcatttgggtttgtgtgtatagaagagttg 30542369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 34276948 - 34277037
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||| |||  ||||  | ||||||||| |||||||||||    
T  34276948 aatatatttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcgaattctggatcactttttcaaaatcgaaccgaacc 34277037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 47997095 - 47997031
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggat 305  Q
    ||||||||| |||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||    
T  47997095 aatatttttcgatgtgcttgaatgttgttttgtaaaaaccgctaggatcggatcggatttcggat 47997031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 42429989 - 42430078
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    ||||| |||||||  ||||||||||||||||| ||||||||||  |||||||||| |||||||||  | ||||||||||| |||| ||||    
T  42429989 aatatatttggatccgtttggatgttgttttgtaaaaaccgctcagatcggatcgaatttcggatcactttttcaaaaccaaaccaaacc 42430078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 24859008 - 24859097
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||| |||||||||||||||||   |||||  ||||||| |  ||| ||||||||||| ||||||  |||||||||||||||||||||    
T  24859008 aatattattggatgtgtttggatgacattttgtgaaaaccgtttggattggatcggattttggattgatttttcaaaaccgaaccgaacc 24859097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 37602709 - 37602649
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttc 301  Q
    |||||||||||||||||||| ||||| ||||| |||||| |||| ||||||||| ||||||    
T  37602709 aatatttttggatgtgtttgaatgttcttttgtaaaaactgctaggatcggatctgatttc 37602649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 6184152 - 6184090
Alignment:
Q  257 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaac 319  Q
    |||||||||||||||| ||||| || || ||||||||||||||||||||  | ||||||||||    
T  6184152 tttggatgttgttttgtaaaaatcgttaggatcggatcggatttcggatcactttttcaaaac 6184090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 31568228 - 31568178
Alignment:
Q  251 gatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttc 301  Q
    |||||| ||||||||||||||| ||||||||||| || |||||||||||||    
T  31568228 gatgtggttggatgttgttttgtaaaaaccgctaagaccggatcggatttc 31568178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 7611686 - 7611794
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||| || |||||||| || ||||| ||||||||||| |||| |||| |||||| |||    || ||||||||||||| ||| |||||||||     
T  7611686 aatatttttggttgcgtttggat-ttattttgtaaaaaccgctaggatcagatcagatttcagatcattttctcaaaaccgaaccaaactaaaccgaact 7611784  T
Q  341 gcaaaagtaa 350  Q
    | ||||||||    
T  7611785 gtaaaagtaa 7611794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 20580592 - 20580681
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||||||| | ||| ||||||||||| || ||  |||| |||||||||||||||| |||  | ||||||||||| |||| ||||    
T  20580592 aatatttttggatgcgcttgaatgttgttttgtaagaattgctaggatcggatcggatttcagatcactttttcaaaaccaaaccaaacc 20580681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 56078437 - 56078520
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaac 324  Q
    |||||||| ||||| ||||||||||||||| | |||||  | | |||||||||||||||||  ||  | |||||||||||||||    
T  56078437 aatattttcggatgcgtttggatgttgtttagtaaaaattgttgtgatcggatcggatttcaaatcactttttcaaaaccgaac 56078520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 24319042 - 24319136
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaacc 335  Q
    |||||||||||||| ||||||||||||||||   ||||||| || |||||| | | |||| ||||  | || ||||||||||||| |||| ||||    
T  24319042 aatatttttggatgcgtttggatgttgttttatcaaaaccgttaggatcggtttgaattttggatcactttctcaaaaccgaaccaaaccgaacc 24319136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 40436458 - 40436531
Alignment:
Q  257 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||||||||| |||||  | || |||| ||||||| |||||||  | ||||||||||| |||||||||    
T  40436458 tttggatgttgttttgtaaaaattgttacgatcagatcggacttcggatcactttttcaaaaccaaaccgaacc 40436531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 1575843 - 1575952
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1575843 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaacc 1575942  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  1575943 gcaaaagtaa 1575952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 27392591 - 27392680
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  27392591 aatatttttggatgtgtttggatgttgttttgaaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaacc 27392680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 241 - 349
Target Start/End: Complemental strand, 323711 - 323603
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||  | |||||||||||||||| |||  |||||||||    
T  323711 aatatttttggatgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcaccttttcaaaaccgaaccaaacagaaccgaacc 323612  T
Q  341 gcaaaagta 349  Q
    |||||||||    
T  323611 gcaaaagta 323603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 28694688 - 28694777
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  28694688 aatatttttttatgtgtttggatgttgttatggaaaaaccgctatgatcggattggatttcggattgcgttttcaaaaccaaaccgaacc 28694777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 36482731 - 36482646
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccg 326  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||  |||||||||||||||||    
T  36482731 aatatttttggatgtgtttggatgttgttttagaaaaaccactatgatcggatcggttttcggattgtcttttcaaaaccgaaccg 36482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 6714317 - 6714212
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||  | || ||||||| ||||||||||||||| ||||    
T  6714317 aatatatttggatgtgtttggatgttattttgtaaaaaccgctaggatcggatcggatttcgaatcactttctcaaaactgaaccgaaccaaaccaaacc 6714218  T
Q  341 gcaaaa 346  Q
    ||||||    
T  6714217 gcaaaa 6714212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 12837398 - 12837306
Alignment:
Q  18 gtgactaatttatttctctattaaatttttctaattgtgagagcgtgctcaaatatttttcagttaggtttgtgtcaatagaaaagttgctcc 110  Q
    |||||||||||||||||||||||||||||| |||||||||| | ||||  |||||||||||| || |||||||||  |||||| |||||||||    
T  12837398 gtgactaatttatttctctattaaatttttttaattgtgagtgtgtgccgaaatatttttcatttgggtttgtgtgtatagaagagttgctcc 12837306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 36582618 - 36582534
Alignment:
Q  242 atatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccg 326  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||  | |||||||||||||||||    
T  36582618 atatatttggatgcgtttggatgttgttttgtaaaaaccgctaagatctgatcggatttcggatcactttttcaaaaccgaaccg 36582534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 10286414 - 10286515
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || ||       |||||||  | |||||||||||||||| |||| |||||||||    
T  10286414 aatatttttggatgtgtttggatgttgttttggcaaaaccgctataattgg-------ttcggatcaccttttcaaaaccgaaccaaaccgaaccgaacc 10286506  T
Q  341 gcaaaagta 349  Q
    |||||||||    
T  10286507 gcaaaagta 10286515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 31280278 - 31280189
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    ||||| |||||||  ||||||||||||||||| ||||| || || ||||||||||||||| ||||  | |||||||||||||||||||||    
T  31280278 aatatatttggatacgtttggatgttgttttgtaaaaatcgttaagatcggatcggattttggatcactttttcaaaaccgaaccgaacc 31280189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 8937894 - 8937846
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatc 289  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  8937894 aatatttttggatgcgtttggatgttgttttgtaaaaaccgctaggatc 8937846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 29988087 - 29988049
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaac 279  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  29988087 aatatttttggatgtgtttggatgttgttttgtaaaaac 29988049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 40987340 - 40987449
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40987340 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaacc 40987439  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  40987440 gcaaaagtaa 40987449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 13554768 - 13554867
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||||||||||||||||| |||||| |||||||    
T  13554768 aatatttttagatgtgtttggatgttgttttggaaaaaccgctataattagatcggatttcgaattgcattttcaaaaccgaaccaaaccaagccgaacc 13554867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 33160518 - 33160626
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||||| | |||||||||||||  | ||||||||| |||||| |||| |||||||||    
T  33160518 aatatttttggatgtgtttggaggttgttttggaaaaactgttatgatcagttcggatttcggatcaccttttcaaaatcgaaccaaaccgaaccgaacc 33160617  T
Q  341 gcaaaagta 349  Q
    |||||||||    
T  33160618 gcaaaagta 33160626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 13521491 - 13521580
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||   |||||||||||  |||||||||||||||||||||||||||    
T  13521491 aatatttttggatgtgtttagatgttgttttggaataaccgctatgactagatcggatttcaaattgcattttcaaaaccgaaccgaacc 13521580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 27110655 - 27110744
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||  ||||  | ||| |||||||||||||||||    
T  27110655 aatatatttggatgtgtttggatgttgttttgtaaaaaccgctaagatcggatcggattctggatcacttttccaaaaccgaaccgaacc 27110744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 328
Target Start/End: Original strand, 41061203 - 41061290
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaa 328  Q
    ||||| |||||||| |||||||| |||||||| ||||||||||| ||||||| ||||||| ||||| | |||||||||||||||||||    
T  41061203 aatatatttggatgcgtttggatattgttttgtaaaaaccgctaagatcggaacggattttggattactttttcaaaaccgaaccgaa 41061290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 1495994 - 1495912
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaa 323  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||  | ||||||||||||||    
T  1495994 aatatatttggatgtgtttggatattgttttgtaaaaaccgctaagatcggatcgggtttcggatcaccttttcaaaaccgaa 1495912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 21610157 - 21610249
Alignment:
Q  18 gtgactaatttatttctctattaaatttttctaattgtgagagcgtgctcaaatatttttcagttaggtttgtgtcaatagaaaagttgctcc 110  Q
    |||| ||||||||||||||||||||||||| ||||| |||| | |||| ||||| ||||||| || |||||||||  |||||| |||||||||    
T  21610157 gtgattaatttatttctctattaaatttttttaattatgagtgtgtgcccaaatgtttttcatttgggtttgtgtgtatagaagagttgctcc 21610249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 12291474 - 12291376
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaac 339  Q
    ||||||||||||||  |||||||||||||||| ||||||| ||| ||| ||||||||||| |||     ||||||| ||||||||||||||||| ||||    
T  12291474 aatatttttggatgcatttggatgttgttttgtaaaaacctctaagattggatcggattttggaccattttttcaataccgaaccgaaccaaactgaac 12291376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 343
Target Start/End: Complemental strand, 20210145 - 20210050
Alignment:
Q  248 ttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaaccgca 343  Q
    ||||| ||||||||||| | ||||   |||||||||  ||| |||||| |||| |||||| |||||||||||| |||| |||||||||||||||||    
T  20210145 ttggacgtgtttggatgatattttatgaaaaccgctcagattggatcgtattttggattgaattttcaaaaccaaaccaaaccaaaccgaaccgca 20210050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 25932182 - 25932249
Alignment:
Q  275 aaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaaccgc 342  Q
    |||||||||  ||| ||||||||||| |||||| |||||||||||| |||| |||||||| |||||||    
T  25932182 aaaaccgctcggattggatcggattttggattgaattttcaaaaccaaaccaaaccaaacagaaccgc 25932249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 35449752 - 35449648
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||| ||| |||| ||||||||||||||||| ||||||||||| |||||| |||| ||| ||||  | |||||||||  ||||| ||||  ||| ||||    
T  35449752 aatatatttagatgcgtttggatgttgttttgtaaaaaccgctaagatcggttcggcttttggatcac-ttttcaaaattgaaccaaaccgtacctaacc 35449654  T
Q  341 gcaaaa 346  Q
    ||||||    
T  35449653 gcaaaa 35449648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 42716224 - 42716135
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||| ||| ||||||||||||||||| |||||  |||| |||||  |  ||||||||||| | |||||||||| ||||| ||||    
T  42716224 aatatttttgaatgcgtttggatgttgttttgtaaaaaaagctaggatcgatttagatttcggattactttttcaaaactgaaccaaacc 42716135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 4986181 - 4986265
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaacc 325  Q
    ||||||||| |||| ||||||||||||||||| | ||||| ||| ||||  ||| ||||| ||||  | ||||||||||||||||    
T  4986181 aatattttttgatgcgtttggatgttgttttgtataaaccactaggatcaaatcagatttaggatcactttttcaaaaccgaacc 4986265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 7946580 - 7946536
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctat 285  Q
    |||||||||||||| | ||| ||||||||||| ||||||||||||    
T  7946580 aatatttttggatgcgcttgaatgttgttttgtaaaaaccgctat 7946536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 241 - 350
Target Start/End: Complemental strand, 43620145 - 43620036
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43620145 aatatttttggatgtgtttggatgttgctttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaacc 43620046  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  43620045 gcaaaagtaa 43620036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 241 - 350
Target Start/End: Complemental strand, 26721264 - 26721155
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| |||||||||||||||||||||||||| ||||    
T  26721264 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcttattttggattgcgttttcaaaaccgaaccgaaccaaaccaaacc 26721165  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  26721164 gcaaaagtaa 26721155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 257 - 350
Target Start/End: Original strand, 1265121 - 1265214
Alignment:
Q  257 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaaccgcaaaagtaa 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  1265121 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaaccaaaccgaaccgcaaaagtaa 1265214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 6345305 - 6345394
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  6345305 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaacc 6345394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 13470864 - 13470973
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |||| |||||||||||||||| ||||||||| ||||    
T  13470864 aatatttttggatgtgtttggatgttgttttggaaaaaacgctacgatcggatcggttttcggtttgccttttcaaaaccgaaccaaaccaaaccaaacc 13470963  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  13470964 gcaaaagtaa 13470973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 31127357 - 31127268
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  31127357 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaacc 31127268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 37949041 - 37948952
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  37949041 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaacc 37948952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 4602596 - 4602704
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||  |||||||||||||||||| |||| |||||||||    
T  4602596 aatatttttggacgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcacattttcaaaaccgaaccaaaccgaaccgaacc 4602695  T
Q  341 gcaaaagta 349  Q
    |||||||||    
T  4602696 gcaaaagta 4602704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 32906903 - 32907003
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||  |||||||||||||||||| |||| |||||||||    
T  32906903 aatatttttggatgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcacattttcaaaaccgaaccaaaccgaaccgaacc 32907002  T
Q  341 g 341  Q
    |    
T  32907003 g 32907003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 26721374 - 26721290
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaacc 325  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||  ||| ||||||||||||| ||||||||||||||||    
T  26721374 aatatttttggatgtgtttggacgttgttttggaaaaaccgctatgatcaaatcagatttcggattgcgttttcaaaaccgaacc 26721290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 4267345 - 4267450
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||| |||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| ||||  | |||||||||||||||| |||| |||||||||    
T  4267345 aatatatttggatgcgtttggatgttattttgtaaaaaccgctaagatcggatcggattttggatcaccttttcaaaaccgaaccaaaccgaaccgaacc 4267444  T
Q  341 gcaaaa 346  Q
    ||||||    
T  4267445 gcaaaa 4267450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 3106183 - 3106272
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||||||| ||||||||||||||||| |||||| |||| ||||| ||||||||| ||||  | || ||||||||||||||||||    
T  3106183 aatatttttggatgcgtttggatgttgttttgtaaaaactgctaggatcgtatcggattttggatcactttctcaaaaccgaaccgaacc 3106272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 350
Target Start/End: Complemental strand, 42200174 - 42200065
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||| |||||||||||||||||||||  |||||||| ||||||||||||| |||||||||  | || |||| |||  | | |||| |||||||||    
T  42200174 aatatttttagatgtgtttggatgttgttttataaaaaccgttatgatcggatcgaatttcggatcactttctcaataccagatcaaaccgaaccgaacc 42200075  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  42200074 gcaaaagtaa 42200065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 350
Target Start/End: Complemental strand, 10183339 - 10183231
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||||||||||||||||||||||   |||||| | || ||| ||||||||||||| || |  |||||||||  ||| | ||||||||| ||||    
T  10183339 aatatttttggatgtgtttggatgttgtttcctaaaaactgttaagattggatcggatttcgaatcgatttttcaaaa-tgaatcaaaccaaacctaacc 10183241  T
Q  341 gcaaaagtaa 350  Q
     |||||||||    
T  10183240 acaaaagtaa 10183231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 27809062 - 27808983
Alignment:
Q  246 ttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaacc 325  Q
    ||||||||||||||| |||||| || | |||||||| || |||||||||||||||| ||   | ||||||||||||||||    
T  27809062 ttttggatgtgtttgaatgttggttagtaaaaaccgttaagatcggatcggatttcagaccactttttcaaaaccgaacc 27808983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 3773822 - 3773915
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccg 336  Q
    ||||| |||||||| |||||||||||| |||| ||||||| ||| ||| ||||||||||| ||||  | ||||||||||| |||| |||| |||||    
T  3773822 aatatatttggatgcgtttggatgttg-tttgtaaaaaccactaagat-ggatcggattttggatcactttttcaaaaccaaaccaaaccgaaccg 3773915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 40619768 - 40619728
Alignment:
Q  290 ggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    ||||||||||| ||||||  |||||||||||||||||||||    
T  40619768 ggatcggattttggattgatttttcaaaaccgaaccgaacc 40619728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 241 - 350
Target Start/End: Complemental strand, 7608388 - 7608279
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7608388 aatatttttggatttgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaacc 7608289  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  7608288 gcaaaagtaa 7608279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 21946710 - 21946818
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||    |||||||||||||||| ||||||||||||||    
T  21946710 aatattttttgatgtgtttggatgttgttttggaaaaaccgctataattggttcggatttcggatcagcttttcaaaaccgaaccaaaccaaaccgaacc 21946809  T
Q  341 gcaaaagta 349  Q
    |||||||||    
T  21946810 gcaaaagta 21946818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 16705456 - 16705374
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||    
T  16705456 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcg-------gattgcgttttcaaaaccgaaccgaacc 16705374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 3901240 - 3901145
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccg 336  Q
    ||||||||||||||||||||||||||||||||  |||||||| | |||| ||| ||| |||||||  | |||| |||||||||||||||| |||||    
T  3901240 aatatttttggatgtgtttggatgttgttttgccaaaaccgccaagatcagattggacttcggatcacttttttaaaaccgaaccgaaccgaaccg 3901145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 10484487 - 10484409
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaac 319  Q
    |||||||||  ||| ||||||||||||| ||  |||||||||||||||||||| |||||||||||||| || |||||||    
T  10484487 aatattttttaatgcgtttggatgttgtcttctaaaaaccgctatgatcggattggatttcggattgctttctcaaaac 10484409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 10386152 - 10386232
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccga 322  Q
    |||| |||||||||  || ||||||||||||| ||||||||||| ||||  ||||||||||||||  | |||||||||||||    
T  10386152 aatacttttggatgcattcggatgttgttttgtaaaaaccgctaggatcatatcggatttcggatcac-ttttcaaaaccga 10386232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 33747876 - 33747960
Alignment:
Q  246 ttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||||||| || ||||||||| | ||| ||||| ||| |||||  ||||||||| || ||||||||||| ||| |||||    
T  33747876 ttttggatgtgtttagaagttgttttgtagaaagcgctaagattggatcatatttcggatagctttttcaaaacctaactgaacc 33747960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 16672012 - 16672122
Alignment:
Q  241 aatatttttggatgtgt-ttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaac 339  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16672012 aatatttttggatgtgtgttggatgttgttttggaaaaactgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaac 16672111  T
Q  340 cgcaaaagtaa 350  Q
    |||||||||||    
T  16672112 cgcaaaagtaa 16672122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 18511557 - 18511658
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || ||       |||||||  | |||||||||||||||| |||| |||||||||    
T  18511557 aatatttttggatgtgtttggatgttgttttggcaaaaccgctataattgg-------ttcggatcaccttttcaaaaccgaaccaaaccgaaccgaacc 18511649  T
Q  341 gcaaaagta 349  Q
    |||||||||    
T  18511650 gcaaaagta 18511658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 327
Target Start/End: Complemental strand, 21352416 - 21352330
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccga 327  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||  | |||||||||||| |||||    
T  21352416 aatatatttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcggattttggatcactttttcaaaaccgtaccga 21352330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 350
Target Start/End: Original strand, 7753802 - 7753902
Alignment:
Q  247 tttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaaccgcaaaa 346  Q
    ||||||||||||| |||||||||||| ||||||   ||||||||||||||||||| |||  | ||||||||||| |||  ||| ||||||||| |||||     
T  7753802 tttggatgtgttttgatgttgttttgtaaaaac---tatgatcggatcggatttcagataactttttcaaaaccaaacaaaacaaaaccgaactgcaaag 7753898  T
Q  347 gtaa 350  Q
    ||||    
T  7753899 gtaa 7753902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 42295916 - 42295812
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||| |||||||| ||||| ||||||||||| |||||| |||| |||||| |||| ||||||||  | ||||||||| |||||| |||| ||||||||     
T  42295916 aatatatttggatgcgtttgtatgttgttttgtaaaaactgctaagatcggttcggctttcggatcac-ttttcaaaatcgaaccaaaccgaaccgaact 42295818  T
Q  341 gcaaaa 346  Q
    ||||||    
T  42295817 gcaaaa 42295812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 10997252 - 10997292
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccg 281  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  10997252 aatatttttggatgtgtttggatgttgttttgtaaaaaccg 10997292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 22596075 - 22596159
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaacc 325  Q
    ||||| ||||||||  ||| |||||||||||| ||||| ||||| |||| |||||||||||||||  | ||||||||||| ||||    
T  22596075 aatatatttggatgcatttcgatgttgttttgtaaaaatcgctaagatcagatcggatttcggatcactttttcaaaaccaaacc 22596159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 34439851 - 34439924
Alignment:
Q  252 atgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaacc 325  Q
    ||||||||| |||||  |||| |||||||||||  || |||||||||| |||||| | ||||||||||||||||    
T  34439851 atgtgtttgaatgttagtttgtaaaaaccgctagaattggatcggattccggattactttttcaaaaccgaacc 34439924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 45305630 - 45305541
Alignment:
Q  18 gtgactaatttatttctctattaaatttttctaattgtgagagcgtgctcaaatatttttcagttaggtttgtgtcaatagaaaagttgctc 109  Q
    |||| |||||||||||||| ||||  ||||||||||||| | ||  || ||||||||||||| |||||  ||| || |||||| ||||||||    
T  45305630 gtgattaatttatttctcttttaatgttttctaattgtgtgtgc--gcccaaatatttttcatttaggggtgtatccatagaagagttgctc 45305541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 257 - 350
Target Start/End: Complemental strand, 37282737 - 37282644
Alignment:
Q  257 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaaccgcaaaagtaa 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37282737 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccgaaccaaaccgaaccgcaaaagtaa 37282644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 241 - 349
Target Start/End: Complemental strand, 32055977 - 32055869
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||  |||||||||||||||||| || | |||||||||    
T  32055977 aatatttttggatgtgtttggatgttgttttggcaaaaccgctatgattggttcggatttcggatcacattttcaaaaccgaaccaaatcgaaccgaacc 32055878  T
Q  341 gcaaaagta 349  Q
    |||||||||    
T  32055877 gcaaaagta 32055869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 257 - 350
Target Start/End: Complemental strand, 19636638 - 19636545
Alignment:
Q  257 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaaccgcaaaagtaa 350  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||    
T  19636638 tttggatgttgttttggaaaagccgcgatgatcggatcggatttcggattgagttttcaaaaccgaaccgaaccaaacccaaccgcaaaagtaa 19636545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 25706301 - 25706410
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaa-accgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaac 339  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||| |||  | |||||||||||||||| |||| ||||||||    
T  25706301 aatatttttggatgtgtttggatgttgttttgaaaaaaaccgctatgatcggttcggacttcagataaccttttcaaaaccgaaccaaaccgaaccgaac 25706400  T
Q  340 cgcaaaagta 349  Q
    ||||||||||    
T  25706401 cgcaaaagta 25706410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 1030461 - 1030566
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||  | ||||| |||||||||| |||| ||| |||||    
T  1030461 aatatatttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcggattttggatcactttttcgaaaccgaaccaaaccgaactgaacc 1030560  T
Q  341 gcaaaa 346  Q
    ||||||    
T  1030561 gcaaaa 1030566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 19997374 - 19997484
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggattt-cggattgcattttcaaaaccgaaccgaaccaaaccgaac 339  Q
    ||||| |||||||| |||| |||||||| | | |||||| |||| ||||||||||||||| |||||  | |||||||||||||||| |||| ||| ||||    
T  19997374 aatatatttggatgcgtttagatgttgtctcgtaaaaactgctaagatcggatcggattttcggatcactttttcaaaaccgaaccaaaccgaactgaac 19997473  T
Q  340 cgcaaaagtaa 350  Q
    |||||||||||    
T  19997474 cgcaaaagtaa 19997484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 29283000 - 29283104
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||||||||||||  |||||||||||||||| |||||||||||     ||| ||||||||||||  | || ||||||  |||||||||| |||||||||    
T  29283000 aatatttttggatgcatttggatgttgttttgtaaaaaccgcta-----ggaacggatttcggatcactttctcaaaattgaaccgaaccgaaccgaacc 29283094  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  29283095 gcaaaagtaa 29283104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 39717312 - 39717244
Alignment:
Q  257 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaacc 325  Q
    |||||||||||| |||||||||||||||||||||| |||||||| ||||  | |||| |||||||||||    
T  39717312 tttggatgttgtattggaaaaaccgctatgatcggttcggattttggatcaccttttgaaaaccgaacc 39717244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 48973790 - 48973739
Alignment:
Q  299 ttcggattgcattttcaaaaccgaaccgaaccaaaccgaaccgcaaaagtaa 350  Q
    |||||||| | |||| ||||||||||||||||||||||||| ||||||||||    
T  48973790 ttcggatttccttttgaaaaccgaaccgaaccaaaccgaactgcaaaagtaa 48973739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 53101337 - 53101250
Alignment:
Q  23 taatttatttctctattaaatttttctaattgtgagagcgtgctcaaatatttttcagttaggtttgtgtcaatagaaaagttgctcc 110  Q
    |||||||||| ||||||||||||||||||||||||| | ||   ||||| ||||||| || | |||||||| || ||| |||||||||    
T  53101337 taatttatttttctattaaatttttctaattgtgagtgtgtctccaaatgtttttcatttggatttgtgtccatggaagagttgctcc 53101250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 350
Target Start/End: Complemental strand, 27167910 - 27167802
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    |||||||||||||| ||||| ||| ||||||| ||||||||||| | ||  |||||||||| |||  | |||| ||||  ||| | ||||||| ||||||    
T  27167910 aatatttttggatgcgtttgaatgctgttttgtaaaaaccgcta-ggtcatatcggatttcagatcacttttttaaaattgaatcaaaccaaatcgaacc 27167812  T
Q  341 gcaaaagtaa 350  Q
    ||||||||||    
T  27167811 gcaaaagtaa 27167802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 40166893 - 40166829
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggat 305  Q
    ||||| ||| |||||||||| ||||||||||| ||||||||||| |||  |||||||| ||||||    
T  40166893 aatatatttagatgtgtttgaatgttgttttgtaaaaaccgctaagattcgatcggatatcggat 40166829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 330
Target Start/End: Complemental strand, 48085392 - 48085314
Alignment:
Q  252 atgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    ||||||||||||||||||||| ||||| || |   |||  ||||||||||||||  | |||||||||||||||| ||||    
T  48085392 atgtgtttggatgttgttttgtaaaaagcgatggtatcaaatcggatttcggatcactttttcaaaaccgaaccaaacc 48085314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 241 - 326
Target Start/End: Original strand, 14461716 - 14461801
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccg 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14461716 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccgaaccg 14461801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 5559393 - 5559482
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  5559393 aatatttttggatgtgtttggatgttgttttggaaaaaccgccatgatcggatcagatttcggattgcattttcaaaaccaaaccgaacc 5559482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 48915833 - 48915745
Alignment:
Q  18 gtgactaatttatttctctattaaatttttctaattgtgagagcgtgctcaaatatttttcagttaggtttgtgtcaatagaaaagttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||||| |||||| |||||    
T  48915833 gtgactaatttatttctctattaaatttttctaattgtgagtgtgtgcccaaatatttttcatttaggtttgtgtccatagaagagttg 48915745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 24064008 - 24063911
Alignment:
Q  253 tgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaaccgcaaaagtaa 350  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||  | ||||||||||| || | |||| ||||||||| |||||||||    
T  24064008 tgtgtatggatgttgttttggaaaaaccgctatgattggatcggatttcggatcactttttcaaaaccaaatcaaaccgaaccgaaccacaaaagtaa 24063911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 41198613 - 41198518
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccg 336  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||  | ||| |||||| ||||| |||| |||||    
T  41198613 aatatatttggatgtgattggatgttgttttgtaaaaaccgctaagatcggatcggatttcggatcacttttccaaaactgaaccaaaccgaaccg 41198518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 24614743 - 24614848
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    ||||| ||||||||  ||||||||| |||||| ||||||||||| ||||||||| ||||| ||||  | |||| ||||||||||| |||| |||||||||    
T  24614743 aatatatttggatgcttttggatgtcgttttgtaaaaaccgctaagatcggatcagattttggatcacttttttaaaaccgaaccaaaccgaaccgaacc 24614842  T
Q  341 gcaaaa 346  Q
    ||||||    
T  24614843 gcaaaa 24614848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 41074903 - 41074992
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||| | |||||||||  | | ||||||||| |||||||||    
T  41074903 aatatttttggatgtgtttggatgttgttttgaaaaaaccgctatggtcagattgaatttcggatcacctcttcaaaaccaaaccgaacc 41074992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 343
Target Start/End: Original strand, 7004675 - 7004777
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaacc 340  Q
    |||||| ||||||||||||| |||   |||||  |||||||||  ||| ||||||||||| ||||||  |||||||||||||||| |||  |||||||||    
T  7004675 aatattattggatgtgtttgaatgacattttgtgaaaaccgcttggattggatcggattttggattgatttttcaaaaccgaaccaaactgaaccgaacc 7004774  T
Q  341 gca 343  Q
    |||    
T  7004775 gca 7004777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 331
Target Start/End: Complemental strand, 33719698 - 33719608
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaacca 331  Q
    |||||||||||||| ||||||||||||||||| |||||| |||| ||||| |||  ||||| |||  | |||||||||| |||| ||||||    
T  33719698 aatatttttggatgcgtttggatgttgttttgtaaaaactgctaggatcgaatcaaatttcagatcactttttcaaaactgaactgaacca 33719608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 16902572 - 16902667
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccg 336  Q
    ||||||||| |||||||||||||||||||||| |||||| || | |||| |||   |||| ||||  | |||||||||||||||| |||| |||||    
T  16902572 aatatttttagatgtgtttggatgttgttttgcaaaaactgcaaggatcagattaaattttggatcactttttcaaaaccgaaccaaaccgaaccg 16902667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 28655580 - 28655668
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaac 329  Q
    ||||| ||| |||||||||||||||||||||| ||||| |  || |||||||||| ||||| |||  | || |||||||| ||||||||    
T  28655580 aatatatttcgatgtgtttggatgttgttttgtaaaaatcaataggatcggatcgaatttcagatcactttctcaaaaccaaaccgaac 28655668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 11956375 - 11956335
Alignment:
Q  290 ggatcggatttcggattgcattttcaaaaccgaaccgaacc 330  Q
    ||||||||||| ||||||  |||||||||||||||||||||    
T  11956375 ggatcggattttggattgatttttcaaaaccgaaccgaacc 11956335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 47862 - 47780
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaa 323  Q
    ||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||  | || |||||||||||    
T  47862 aatatttgtggatgtgtttggatgttgttttgtaaaaatcgctatgatcagatcggatttcggatcactttctcaaaaccgaa 47780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 5490 - 5574
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaacc 325  Q
    |||||||||||||| | ||||||||||||||| || || ||||| |||||||||||||||  |||  | ||||||||||| ||||    
T  5490 aatatttttggatgcgcttggatgttgttttgtaagaatcgctaggatcggatcggatttaagatcactttttcaaaaccaaacc 5574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 346
Target Start/End: Complemental strand, 1356 - 1267
Alignment:
Q  257 tttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccgaaccaaaccgaaccgcaaaa 346  Q
    ||||||| |||||||| ||| ||||||| ||||| ||||||||||||||  | ||||||||| ||||   |||| |||| ||||||||||    
T  1356 tttggatattgttttgtaaacaccgctaagatcgaatcggatttcggatcactttttcaaaatcgaattaaaccgaaccaaaccgcaaaa 1267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 326
Target Start/End: Original strand, 15490 - 15575
Alignment:
Q  241 aatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcattttcaaaaccgaaccg 326  Q
    ||||||||| |||| |||||| |||||||||| |||||  |||| ||||||||  ||||||||||  | ||||||||||| |||||    
T  15490 aatatttttagatgcgtttggttgttgttttgtaaaaatagctaggatcggattagatttcggataactttttcaaaaccaaaccg 15575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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