View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14547_low_4 (Length: 282)
Name: NF14547_low_4
Description: NF14547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14547_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 47076637 - 47076387
Alignment:
| Q |
18 |
aatttcactataaattgttttagattggggtataatacagggcctacttatagcctgctaaattcttgaaagaaaaaacttcagcattagggtcttttag |
117 |
Q |
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| T |
47076637 |
aatttcactataaattgttttagattggggtaaaatacagggcctacttatagcctgctaaattcttgaaagaaaaaacttcagcattagggtcttttag |
47076538 |
T |
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| Q |
118 |
tttgcaataaaaagttgtaatggtatttgtgaagtttatatatttgaaaactgaaagtttgaatgttatgttacttcatgcagacactgaaactgagtga |
217 |
Q |
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| T |
47076537 |
tttgcaataaaaagttgtaatggtatctgtgaagtttatatatttgaaaactgaaagtttgaatgttatgttacttcatgcagacactgaaactgagtga |
47076438 |
T |
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| Q |
218 |
tcaggatttccttggagaggcgagttgcactttatcagaggtcagtataat |
268 |
Q |
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| T |
47076437 |
tcaggatttccttggagaggcgagttgcactttatcagaggtcagtataat |
47076387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 33 - 265
Target Start/End: Original strand, 18229528 - 18229763
Alignment:
| Q |
33 |
tgttttagattggggtataatacagggcctacttatagcctgctaaattcttgaaagaaaaaacttcagcattagggtctttt-agtttgcaataaaaag |
131 |
Q |
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| T |
18229528 |
tgttttagattcgggtataatacaaggctaacttgcagcctgctaaactcttgatagaaaaaacttcaactatagggtatttttagtttggaataaaaag |
18229627 |
T |
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| Q |
132 |
ttgtaatggtatttgtgaagtttatatatttgaaaactgaaagtttgaat--gttatgttacttcatgcagacactgaaactgagtgatcaggatttcct |
229 |
Q |
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| T |
18229628 |
ccgtgatggtgtcggtgaagtttatatatttgaaaatcgaatgtttgaatatgttacgttacttcatgcagactctaaaactgaatgatcaagaattcct |
18229727 |
T |
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| Q |
230 |
tggagaggcgagttgcactttatcagaggtcagtat |
265 |
Q |
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| T |
18229728 |
tggagaggcaagttgcactttatcagaggtcagtat |
18229763 |
T |
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