View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14548_high_1 (Length: 498)
Name: NF14548_high_1
Description: NF14548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14548_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 36842921 - 36842451
Alignment:
| Q |
19 |
acataagtttttgaaaaccattattatgcctctagaattttatttccattttctgaaaaaataaatagttatgtagcttaggaaaattcaatcatatata |
118 |
Q |
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| T |
36842921 |
acataagtttttgaaaaccattattatgcctctagaattttatttccattttctgaaaaaataaatagttatgtagcttaggaaaattcaatcatatata |
36842822 |
T |
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| Q |
119 |
ttgttgaaatggatcaagttcaaggtggtggtaatgagtatccagttttcttacatggtgacttagatctatttatcatagaagcaaaatctcttccaaa |
218 |
Q |
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| T |
36842821 |
ttgttgaaatggatcaagttcaaggtggtggtaatgagtatccagttttcttacatggtgacttagatctatttatcatagaagcaaaatctcttccaaa |
36842722 |
T |
|
| Q |
219 |
tctagatttatcaactgaagcaattagaaaatgtctaactatgggaaatagttgcacgccaccttttgtaaaaggactcaaaacacactcaggaaaagac |
318 |
Q |
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| T |
36842721 |
tctagatttatcaactgaagcaattagaaaatgtctaactatgggaaatagttgcacaccaccttttgtaaaaggactcaaaacccactcaggaaaagac |
36842622 |
T |
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| Q |
319 |
aagatcataacaagtgacccttatgtatctatttgtctagctggtgcaaccatagcacaaacaagagtcattccgaattgcgaaaaccctttatgggatg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36842621 |
aagatcataacaagtgacccttatgtatctatttgtctagctggtgcaaccatagcacaaacaagagtcattccgaattgcgaaaaccctttatgggatg |
36842522 |
T |
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| Q |
419 |
aacattttcttgttcctgttgctcatcctgctcacaaaattgaatttctagtaaaagataatgatattctt |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36842521 |
aacattttcttgttcctgttgctcatcctgctcacaaaattgaatttctagtaaaagataatgatattctt |
36842451 |
T |
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