View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14548_low_3 (Length: 299)
Name: NF14548_low_3
Description: NF14548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14548_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 46752844 - 46753118
Alignment:
| Q |
17 |
aaagagatcattggtgaagctaataaaacgaagggaagagaatttgaataatgggaatgaagaaagaattgaaaaaggtccaaaagatttactaggacta |
116 |
Q |
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| T |
46752844 |
aaagaaatcattggtgaagctaataaaacgaagggaagagaatttgaataatgggaatgaagaaagaattgaaaaaggtccaaaagatttactaggacta |
46752943 |
T |
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| Q |
117 |
atgatagaagctagctccaacaacaataacaccaatgtgacagtggatgatatcgtggaagagtgcaagagctttttctttgcaggcaaacaaaccacat |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46752944 |
atgatagaagctagctccaacaacaacaacaccaatgtgacagtggatgatatcgtggaagagtgcaagagctttttctttgcaggcaaacaaaccacat |
46753043 |
T |
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| Q |
217 |
caaacttgctgacgtggacgaccattctcttagcaatgcacccacaatggcaagtacaggcacgtgatgatgtcc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46753044 |
caaacttgctgacgtggacgaccattctcttagcaatgcacccacaatggcaagtacaggcacgtgatgaggtcc |
46753118 |
T |
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