View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14548_low_8 (Length: 247)
Name: NF14548_low_8
Description: NF14548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14548_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 29402592 - 29402360
Alignment:
| Q |
1 |
gaagaacacataagagcccagattcggtgaggttgaacttcagaacctgataaaatgatcaatcaacttgttgattcaatggagtaataagtgggagttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29402592 |
gaagaacacataagagcccagattcggtgaggttgaacttcagaacctgataaaatgatcaatcaacttgttgattcaatggagtaataagtgggagttg |
29402493 |
T |
|
| Q |
101 |
tgatgtactaaatcctacaatttcattgcaaaggtaaatccaactatatagaaagtgatgtaaaaaatgtattatacaaagcataggttaataacctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29402492 |
tgatgtactaaatcctacaatttcattgcaaaggtaaatccaactatatagaaagtgatgtaaaaaatgtattatacaaagcataggttaataacctgat |
29402393 |
T |
|
| Q |
201 |
tgtagtaagtaggcatccatgttaatagaataa |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
29402392 |
tgtagtaagtaggcatccatgttaatagaataa |
29402360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 10159250 - 10159482
Alignment:
| Q |
1 |
gaagaacacataagagcccagattcggtgaggttgaacttcagaacctgataaaatgatcaatcaacttgttgattcaatggagtaataagtgggagttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10159250 |
gaagaacacataagagcccagattcggtgaggttgaacttcagaacctgataaaatgatcaatcaacttgttgattcaatggagtaataagtgggagttg |
10159349 |
T |
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| Q |
101 |
tgatgtactaaatcctacaatttcattgcaaaggtaaatccaactatatagaaagtgatgtaaaaaatgtattatacaaagcataggttaataacctgat |
200 |
Q |
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| T |
10159350 |
tgatgtactaaatcctacaatttcattgcaaaggtaaatccaactatatagaaagtgatgtaaaaaatgtattatacaaagcataggttaataacctgat |
10159449 |
T |
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| Q |
201 |
tgtagtaagtaggcatccatgttaatagaataa |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
10159450 |
tgtagtaagtaggcatccatgttaatagaataa |
10159482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11318251 - 11318306
Alignment:
| Q |
1 |
gaagaacacataagagcccagattcggtgaggttgaacttcagaacctgataaaat |
56 |
Q |
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|||| |||||||| || |||||||| |||||||||||||||||||||||| ||||| |
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| T |
11318251 |
gaaggacacataatagtccagattccgtgaggttgaacttcagaacctgagaaaat |
11318306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 11318900 - 11318939
Alignment:
| Q |
194 |
acctgattgtagtaagtaggcatccatgttaatagaataa |
233 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||| |
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| T |
11318900 |
acctgattgtagtacgtaggcatccaggttaatagaataa |
11318939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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