View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14549_high_1 (Length: 393)

Name: NF14549_high_1
Description: NF14549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14549_high_1
NF14549_high_1
[»] chr4 (8 HSPs)
chr4 (115-386)||(53679807-53680078)
chr4 (18-128)||(53678593-53678703)
chr4 (176-216)||(47645245-47645285)
chr4 (174-217)||(50721726-50721769)
chr4 (175-209)||(193587-193621)
chr4 (175-217)||(7632444-7632486)
chr4 (175-209)||(31574922-31574956)
chr4 (175-211)||(16019529-16019565)
[»] chr6 (1 HSPs)
chr6 (174-217)||(33551659-33551702)
[»] chr7 (3 HSPs)
chr7 (175-217)||(31445364-31445406)
chr7 (175-209)||(3683586-3683620)
chr7 (175-217)||(18505820-18505862)
[»] chr5 (4 HSPs)
chr5 (178-217)||(9168150-9168189)
chr5 (175-217)||(7287172-7287214)
chr5 (175-217)||(37172737-37172779)
chr5 (178-218)||(18692791-18692831)
[»] chr3 (3 HSPs)
chr3 (178-217)||(51672909-51672948)
chr3 (176-217)||(52417812-52417853)
chr3 (177-217)||(49021758-49021798)
[»] chr1 (4 HSPs)
chr1 (175-217)||(9987998-9988040)
chr1 (175-209)||(33076174-33076208)
chr1 (180-217)||(2206201-2206238)
chr1 (175-211)||(41677307-41677343)
[»] chr8 (1 HSPs)
chr8 (178-239)||(11180332-11180393)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 115 - 386
Target Start/End: Original strand, 53679807 - 53680078
Alignment:
Q  115 aaaattataccatttacgaatatgaaactactaccgcgttattaataatatatactcttgtagagagagaaaataaaaatacaatgtgagtatgaaaaag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||     
T  53679807 aaaattataccatttacgaatatgaaactactaccgcgttattaataatatatactcttatagagagagaaaataaaaatacaaagtgagtatgaaaaat 53679906  T
Q  215 aaataattgttcaaatattatttcttaaatctatacccggagaatttagggtcttgaaactctattgcattattcattaaagttcactccactactatca 314  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  53679907 aaataattgttcaaatattatttcttaaatctatacttgaagaatttagggtcttgaaactctattgcattattcattaaagttcactccactactatct 53680006  T
Q  315 atatgtatatgtctcgattctcttctcactcttcttctttttacctttttatttcaaatgtcgctcatctct 386  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  53680007 atatgtatatgtctcgattctcttctcactcttcttctttttatctttttatttcaaatgtcgctcatctct 53680078  T

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Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 53678593 - 53678703
Alignment:
Q  18 aggacaatttatctttgcacgttcaatgaaatttaatatatgctacgcttgatttaatgtgaacaaaaccaacatcattatttaatacagtcgacacaaa 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53678593 aggacaatttatctgtgcacgttcaatgaaatttaatatatgctacgcttgatttaatgtgaacaaaaccaacatcattatttaatacagtcgacacaaa 53678692  T
Q  118 attataccatt 128  Q
    |||||||||||    
T  53678693 attataccatt 53678703  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 47645245 - 47645285
Alignment:
Q  176 agagagagaaaataaaaatacaatgtgagtatgaaaaagaa 216  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  47645245 agagagagaaaataaaaatacaatgtaagtatgaaagagaa 47645285  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 50721726 - 50721769
Alignment:
Q  174 gtagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    ||||||||||||| |||||||| ||||||||||||||| |||||    
T  50721726 gtagagagagaaagtaaaaatataatgtgagtatgaaagagaaa 50721769  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 193621 - 193587
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatga 209  Q
    ||||||||||||||||||||||| |||||||||||    
T  193621 tagagagagaaaataaaaatacagtgtgagtatga 193587  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 7632444 - 7632486
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    |||||||||||| |||||||| ||||||||||||||| |||||    
T  7632444 tagagagagaaagtaaaaatataatgtgagtatgaaagagaaa 7632486  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 31574922 - 31574956
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatga 209  Q
    ||||||||||||||||||||| |||||||||||||    
T  31574922 tagagagagaaaataaaaatataatgtgagtatga 31574956  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 16019565 - 16019529
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatgaaa 211  Q
    |||||||||||| |||||||| |||||||||||||||    
T  16019565 tagagagagaaagtaaaaatataatgtgagtatgaaa 16019529  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 33551702 - 33551659
Alignment:
Q  174 gtagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  33551702 gtagagagagaatataaaaatacaatttgagtatgaaaaagaaa 33551659  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 31445406 - 31445364
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  31445406 tagagagagaaagtaaaaatataatgtgagtatgaaaaagaaa 31445364  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 3683620 - 3683586
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatga 209  Q
    ||||||||||||||||||||| |||||||||||||    
T  3683620 tagagagagaaaataaaaatataatgtgagtatga 3683586  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 18505862 - 18505820
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    |||||||||||| |||||| | |||||||||||||||||||||    
T  18505862 tagagagagaaactaaaaacataatgtgagtatgaaaaagaaa 18505820  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 9168150 - 9168189
Alignment:
Q  178 agagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  9168150 agagagaaaataaaaatataatgtgagtatgaaagagaaa 9168189  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 7287172 - 7287214
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    |||||||||||| |||||||| ||||||||||||||| |||||    
T  7287172 tagagagagaaagtaaaaatataatgtgagtatgaaagagaaa 7287214  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 37172737 - 37172779
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    |||||||||||| |||||| ||||||||||||||| |||||||    
T  37172737 tagagagagaaattaaaaacacaatgtgagtatgagaaagaaa 37172779  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 18692831 - 18692791
Alignment:
Q  178 agagagaaaataaaaatacaatgtgagtatgaaaaagaaat 218  Q
    ||||||||||||| |||| ||||||||||||||||| ||||    
T  18692831 agagagaaaataagaataaaatgtgagtatgaaaaaaaaat 18692791  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 51672948 - 51672909
Alignment:
Q  178 agagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  51672948 agagagagaataaaaatataatgtgagtatgaaaaagaaa 51672909  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 52417853 - 52417812
Alignment:
Q  176 agagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    ||||||||||| |||||||||||||||| ||| |||||||||    
T  52417853 agagagagaaagtaaaaatacaatgtgaatataaaaaagaaa 52417812  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 49021798 - 49021758
Alignment:
Q  177 gagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    |||||| |||||||||||| ||||||||||||| |||||||    
T  49021798 gagagacaaaataaaaatataatgtgagtatgagaaagaaa 49021758  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 9988040 - 9987998
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    |||||||||||| |||||||| ||||||||||||||| |||||    
T  9988040 tagagagagaaagtaaaaatataatgtgagtatgaaagagaaa 9987998  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 33076208 - 33076174
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatga 209  Q
    ||||||||||||||||||||| |||||||||||||    
T  33076208 tagagagagaaaataaaaatataatgtgagtatga 33076174  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 2206201 - 2206238
Alignment:
Q  180 agagaaaataaaaatacaatgtgagtatgaaaaagaaa 217  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  2206201 agagaaaataaaaatataatatgagtatgaaaaagaaa 2206238  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 41677307 - 41677343
Alignment:
Q  175 tagagagagaaaataaaaatacaatgtgagtatgaaa 211  Q
    |||||||| |||||||||||| |||||||||||||||    
T  41677307 tagagagataaaataaaaatataatgtgagtatgaaa 41677343  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 11180393 - 11180332
Alignment:
Q  178 agagagaaaataaaaatacaatgtgagtatgaaaaagaaataattgttcaaatattatttct 239  Q
    ||||||| ||||| |||| ||||||||||||| | |||||||| ||| ||||||| ||||||    
T  11180393 agagagagaataagaatataatgtgagtatgagagagaaataactgtacaaatatcatttct 11180332  T

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