View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14549_low_2 (Length: 379)

Name: NF14549_low_2
Description: NF14549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14549_low_2
NF14549_low_2
[»] chr6 (7 HSPs)
chr6 (4-196)||(17171570-17171760)
chr6 (201-316)||(30045449-30045565)
chr6 (201-302)||(32729554-32729656)
chr6 (201-301)||(1701897-1701998)
chr6 (200-293)||(1702184-1702278)
chr6 (201-238)||(35033362-35033399)
chr6 (272-316)||(4140150-4140194)
[»] chr8 (8 HSPs)
chr8 (201-316)||(34373598-34373714)
chr8 (204-302)||(34373908-34374007)
chr8 (204-303)||(21008434-21008534)
chr8 (201-316)||(21397240-21397356)
chr8 (201-316)||(21791733-21791849)
chr8 (205-290)||(15937837-15937923)
chr8 (201-238)||(22576689-22576726)
chr8 (201-284)||(34074294-34074378)
[»] chr2 (13 HSPs)
chr2 (201-316)||(26533281-26533397)
chr2 (203-316)||(26533579-26533694)
chr2 (201-291)||(38144017-38144108)
chr2 (211-316)||(31074227-31074333)
chr2 (201-316)||(44279304-44279420)
chr2 (252-316)||(8596465-8596530)
chr2 (201-316)||(21089078-21089194)
chr2 (201-238)||(27187497-27187534)
chr2 (201-238)||(27837311-27837348)
chr2 (268-316)||(14913566-14913614)
chr2 (201-237)||(27187002-27187038)
chr2 (201-237)||(27836544-27836580)
chr2 (243-302)||(28163241-28163301)
[»] scaffold0007 (1 HSPs)
scaffold0007 (201-316)||(262123-262239)
[»] chr7 (10 HSPs)
chr7 (201-316)||(8356212-8356328)
chr7 (201-300)||(3958364-3958464)
chr7 (201-316)||(23071747-23071863)
chr7 (201-289)||(17944568-17944657)
chr7 (201-316)||(13789498-13789614)
chr7 (201-316)||(3958054-3958169)
chr7 (201-305)||(23072053-23072158)
chr7 (201-269)||(23072349-23072417)
chr7 (202-316)||(37223838-37223953)
chr7 (204-293)||(25193994-25194084)
[»] chr5 (6 HSPs)
chr5 (201-316)||(36975929-36976045)
chr5 (201-305)||(36975240-36975345)
chr5 (201-316)||(10567342-10567458)
chr5 (204-316)||(15173457-15173570)
chr5 (204-316)||(22586967-22587080)
chr5 (225-316)||(39569918-39570010)
[»] chr1 (8 HSPs)
chr1 (201-316)||(32024953-32025069)
chr1 (201-316)||(32025249-32025365)
chr1 (201-316)||(32025545-32025661)
chr1 (201-302)||(31412408-31412510)
chr1 (201-293)||(9448648-9448741)
chr1 (201-305)||(51865811-51865915)
chr1 (204-310)||(4662937-4663045)
chr1 (252-315)||(34228434-34228498)
[»] scaffold0251 (1 HSPs)
scaffold0251 (201-305)||(12603-12708)
[»] chr4 (7 HSPs)
chr4 (201-302)||(19987942-19988044)
chr4 (201-316)||(19987648-19987764)
chr4 (216-316)||(7833756-7833857)
chr4 (201-305)||(8107426-8107531)
chr4 (274-315)||(18936201-18936242)
chr4 (201-289)||(38978716-38978805)
chr4 (201-316)||(11028758-11028873)
[»] chr3 (2 HSPs)
chr3 (201-316)||(3870770-3870886)
chr3 (252-316)||(7407878-7407943)


Alignment Details
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 17171760 - 17171570
Alignment:
Q  4 aacaatatcaggataactcaatgccaaaacctcctgatttgaaccatccaaatgcgaaaaagaaggtggcaaccttcgtattgaatgcaaccaaccccgt 103  Q
    ||||||| ||||||||||||||||||||||||| | |||| |||||||||||||||| |||||||| || |||||||||||| ||||||||| ||| ||     
T  17171760 aacaataccaggataactcaatgccaaaacctcttaatttaaaccatccaaatgcgacaaagaaggcggtaaccttcgtattaaatgcaacctacctcgc 17171661  T
Q  104 tgtaaaatcgtatgctcagaagtatatcctcgtaatcagacgtcattttcttcatctctctatgcaatgcatcaataatataattgagaatct 196  Q
    ||||| || |||||||||||||  ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  17171660 tgtaagatggtatgctcagaag--tatcctcataatcagacctcattttcttcatctctctacgcaatgcatcaataatttaattgagaatct 17171570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 30045449 - 30045565
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  30045449 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 30045548  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  30045549 tgggcttaagtcctaac 30045565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 32729554 - 32729656
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    |||||||| |||||||||||||| ||| ||||||||||  |  ||||||| ||| ||||||||||||| ||||||||||||||| ||||||||| |||||    
T  32729554 taggagtctcacatcgagtagatcaaactgcttgatgtgatacttaagtcatgaagttctcccacctattggactagtcttttgagttgggctctcctca 32729653  T
Q  300 tgg 302  Q
    |||    
T  32729654 tgg 32729656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 301
Target Start/End: Complemental strand, 1701998 - 1701897
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    |||||||| |||||||||||||| ||| | |||||||| ||  ||||| |  ||||||||||||| || |||||||||||||| |||||| ||| |||||    
T  1701998 taggagtctcacatcgagtagatcaaaatacttgatgtggtacttaagccaagaggttctcccacttattggactagtcttttaggttggcctctcctca 1701899  T
Q  300 tg 301  Q
    ||    
T  1701898 tg 1701897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 1702278 - 1702184
Alignment:
Q  200 ataggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctc 293  Q
    |||| ||||||||||||||||||| ||| || ||||||| ||  ||||| | ||||||||||| | ||| |||| | ||||||||||||||||||    
T  1702278 atagaagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcctatctattggattggtcttttgggttgggctc 1702184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 35033362 - 35033399
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgt 238  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  35033362 taggagtctcacattgagtagattaaagtgcttgatgt 35033399  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 4140150 - 4140194
Alignment:
Q  272 actagtcttttgggttgggctcacctcatgggctaaaatcctaac 316  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||    
T  4140150 actagtcttttgggttggactctcttcatgggcttaaatcctaac 4140194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 34373714 - 34373598
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    ||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  34373714 taggactctcacatcgagtagattaaagtgcttgatgtagtacttaagtcgtgaggttctcccacctattggactagtcttttggattgggctctcctca 34373615  T
Q  300 tgggctaaaatcctaac 316  Q
    || ||| ||||||||||    
T  34373614 tgagcttaaatcctaac 34373598  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 34374007 - 34373908
Alignment:
Q  204 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctcatgg 302  Q
    ||||| || |||||||||||||||||||||||||| ||  ||||| ||||||||||||| || || ||||||||||||||| |||||||||  |||||||    
T  34374007 gagtctcatatcgagtagattaaagtgcttgatgtggtacttaagccgtgaggttctcctacatattggactagtcttttgcgttgggctcttctcatgg 34373908  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 303
Target Start/End: Complemental strand, 21008534 - 21008434
Alignment:
Q  204 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctcatgg 302  Q
    ||||||||||||||||| || |||||| ||| ||| ||  ||||||   |||| || |||||||| |||||| |||||||||||||||||| ||||||||    
T  21008534 gagtcccacatcgagtacataaaagtgtttgttgtggtacttaagttacgaggctcccccacctaatggacttgtcttttgggttgggctctcctcatgg 21008435  T
Q  303 g 303  Q
    |    
T  21008434 g 21008434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 21397240 - 21397356
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacct-atggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||| |||||||||| |||||| ||||||| || |||||  |  | || |||||||||| |||||||||||||||   ||||||||  || |    
T  21397240 taggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtcttttcaattgggctctgctaa 21397339  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| ||||||||||    
T  21397340 tgggcttaaatcctaac 21397356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 21791733 - 21791849
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacct-atggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||| |||||||||| |||||| ||||||| || |||||  |  | || |||||||||| |||||||||||||||   ||||||||  || |    
T  21791733 taggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtcttttcaattgggctctgctaa 21791832  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| ||||||||||    
T  21791833 tgggcttaaatcctaac 21791849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 15937923 - 15937837
Alignment:
Q  205 agtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttggg 290  Q
    |||||||||||| ||| || ||| |||||||||| ||  ||||| | ||||  ||||||||||| ||||||||||||||||||||||    
T  15937923 agtcccacatcgggtatataaaattgcttgatgtggtacttaagccatgagtctctcccacctaatggactagtcttttgggttggg 15937837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 22576726 - 22576689
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgt 238  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  22576726 taggagtcccacatcgagtagataaaaatgcttgatgt 22576689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 34074294 - 34074378
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgg 284  Q
    ||||| || |||||||||||||| ||| | ||||||||  |  ||||| | ||||| ||||||||||| ||||||||||||||||    
T  34074294 taggattctcacatcgagtagatcaaaatacttgatgtgatacttaaggcatgaggctctcccacctattggactagtcttttgg 34074378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 26533281 - 26533397
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacct-atggactagtcttttgggttgggctcacctca 299  Q
    ||||||||||||||||||||||| |||||||||||||| ||  ||||  | |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  26533281 taggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaccatgaggttctcccacctaatggactagtcttttgggttgggctctcctca 26533380  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  26533381 tgggcttaagtcctaac 26533397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 26533579 - 26533694
Alignment:
Q  203 ggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcg-tgaggttctcccacctat-ggactagtcttttgggttgggctcacctcat 300  Q
    ||||||||||||||||||||| |||||||||||||| ||  ||||  |  |||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  26533579 ggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaaccatgaggttctcccacctattggactagtcttttgggttgggctctcctcat 26533678  T
Q  301 gggctaaaatcctaac 316  Q
    ||||| || |||||||    
T  26533679 gggcttaagtcctaac 26533694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 38144017 - 38144108
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggc 291  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| |||||||||||||    
T  38144017 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggc 38144108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 31074227 - 31074333
Alignment:
Q  211 acatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctat-ggactagtcttttgggttgggctcacctcatgggctaaaa 309  Q
    ||||||||||||| |||||  ||||||| ||  ||||| | ||||||||||  | |||| |||||||||||||||||||||||| ||||||||||| ||     
T  31074227 acatcgagtagatcaaagtatttgatgtggtacttaagccatgaggttctcatatctattggactagtcttttgggttgggctctcctcatgggcttaag 31074326  T
Q  310 tcctaac 316  Q
    |||||||    
T  31074327 tcctaac 31074333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 44279304 - 44279420
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    ||||||||||||||| ||||||| |||||| ||||||  ||  ||||  | ||||||||||||||||| | ||||| ||||||||||||||||| |||||    
T  44279304 taggagtcccacatcaagtagatcaaagtgtttgatgcggtacttaaaccttgaggttctcccacctattagactaatcttttgggttgggctctcctca 44279403  T
Q  300 tgggctaaaatcctaac 316  Q
     | ||| || |||||||    
T  44279404 cgagcttaagtcctaac 44279420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 8596530 - 8596465
Alignment:
Q  252 tgaggttctcccacctat-ggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 316  Q
    |||||||||||||||||| |||||||| ||||||||||||||| |||| |||||| || |||||||    
T  8596530 tgaggttctcccacctattggactagttttttgggttgggctctcctcgtgggcttaagtcctaac 8596465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 21089078 - 21089194
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacct-atggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||||||||||| || | |||| || |||| || |||||  | | ||| ||| | |||| ||||| |||||||||||||||||||| | |||    
T  21089078 taggagtcccacatcgagtaaataagagtgttttatgtggtatttaaaccatcaggctctgcgacctaatggattagtcttttgggttgggctctcttca 21089177  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| ||||||||||    
T  21089178 tgggcttaaatcctaac 21089194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 27187534 - 27187497
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgt 238  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  27187534 taggagtcccacatcgagtagatcaaagtgcttgatgt 27187497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 27837348 - 27837311
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgt 238  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  27837348 taggagtcccacatcgagtagatcaaagtgcttgatgt 27837311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 14913614 - 14913566
Alignment:
Q  268 atggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 316  Q
    ||||||||||||||| |||||||||| |||||| |||| || |||||||    
T  14913614 atggactagtcttttcggttgggctcccctcataggcttaagtcctaac 14913566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 27187038 - 27187002
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatg 237  Q
    |||||||| |||||||||||||| |||||||||||||    
T  27187038 taggagtctcacatcgagtagatcaaagtgcttgatg 27187002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 27836580 - 27836544
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatg 237  Q
    |||||||| |||||||||||||| |||||||||||||    
T  27836580 taggagtctcacatcgagtagatcaaagtgcttgatg 27836544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 28163241 - 28163301
Alignment:
Q  243 tttaagtcgtgaggttctcccacct-atggactagtcttttgggttgggctcacctcatgg 302  Q
    |||||| |||||||||||||||| | |||||||||| |||||||||| |||| || |||||    
T  28163241 tttaagccgtgaggttctcccacttaatggactagtattttgggttgagctctccacatgg 28163301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 262123 - 262239
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  262123 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 262222  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  262223 tgggcttaagtcctaac 262239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 8356328 - 8356212
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctat-ggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | |||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  8356328 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctataggactagttttttgggttgggctctcctca 8356229  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  8356228 tgggcttaagtcctaac 8356212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 3958464 - 3958364
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctat-ggactagtcttttgggttgggctcacctca 299  Q
    |||||||| |||||||||||||| ||||| |||||||| ||  ||||||| ||||||||||||| |||| ||||||||||||||| |||||||| |||||    
T  3958464 taggagtctcacatcgagtagatcaaagtacttgatgtggtacttaagtcatgaggttctcccatctataggactagtcttttggattgggctctcctca 3958365  T
Q  300 t 300  Q
    |    
T  3958364 t 3958364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 23071747 - 23071863
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctat-ggactagtcttttgggttgggctcacctca 299  Q
    |||||||||| |||||||||||| ||| || ||||||| ||  ||||  | ||| |||||||||||||| |||||||||||||||||||||||| | |||    
T  23071747 taggagtccctcatcgagtagatcaaaatgtttgatgtggtacttaaaccatgaagttctcccacctattggactagtcttttgggttgggctctcatca 23071846  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| ||||||||||    
T  23071847 tgggcttaaatcctaac 23071863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 17944568 - 17944657
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacct-atggactagtcttttgggttgg 289  Q
    ||||||||||||||||||||||| |||||||| ||||| ||  ||||| | ||||| ||||||| || ||||||||||||||| ||||||    
T  17944568 taggagtcccacatcgagtagataaaagtgctcgatgtggtacttaagccatgaggctctcccatctaatggactagtctttttggttgg 17944657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 13789614 - 13789498
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||||||| |||  | |||||||||||||| ||  ||||| | || || ||||||||||| ||||||||| |||| |||||||||| ||||     
T  13789614 taggagtcccacatcgggtaactaaaagtgcttgatgtggtacttaagccatggggctctcccacctattggactagttttttaggttgggctctcctct 13789515  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  13789514 tgggcttaagtcctaac 13789498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 3958169 - 3958054
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctat-ggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||| |||||||||| || || ||||||||  |  ||||||  |||||||||||||||||| |||||||||||||| |||| |||| | ||     
T  3958169 taggagtcccacgtcgagtagatcaa-gtacttgatgtgatacttaagttatgaggttctcccacctataggactagtcttttgagttgagctctcttcg 3958071  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  3958070 tgggcttaagtcctaac 3958054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 23072053 - 23072158
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    ||||||||||||||||||||||| ||| ||||| ||||  |  ||||  | ||| ||||||||||||| |||||||  |||||||||| ||||| | |||    
T  23072053 taggagtcccacatcgagtagatcaaaatgcttaatgtgatacttaaaccatgaagttctcccacctattggactacacttttgggttaggctctcttca 23072152  T
Q  300 tgggct 305  Q
    ||||||    
T  23072153 tgggct 23072158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 23072349 - 23072417
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctat 269  Q
    ||||||||||||||||||||||| ||| |||||||||| ||  ||||  | ||| ||||||||||||||    
T  23072349 taggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaaaccatgaagttctcccacctat 23072417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 316
Target Start/End: Original strand, 37223838 - 37223953
Alignment:
Q  202 aggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacct-atggactagtcttttgggttgggctcacctcat 300  Q
    ||||||||||||| |||||||| ||||||||  |||  ||  ||||| | ||||  |||||||||| |||||||||||||  | ||||||||| ||| ||    
T  37223838 aggagtcccacattgagtagataaaagtgctcaatgaggtacttaagccatgagactctcccacctaatggactagtcttaggcgttgggctctccttat 37223937  T
Q  301 gggctaaaatcctaac 316  Q
    ||||| || |||||||    
T  37223938 gggcttaagtcctaac 37223953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 293
Target Start/End: Original strand, 25193994 - 25194084
Alignment:
Q  204 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctc 293  Q
    ||||||||||||| ||| || ||| || ||||||| ||  ||||| | ||||| ||| ||||||| |||| ||||||||||||||||||||    
T  25193994 gagtcccacatcgggtaaataaaaatgtttgatgtggtacttaagccatgaggctcttccacctaatggattagtcttttgggttgggctc 25194084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 36975929 - 36976045
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacct-atggactagtcttttgggttgggctcacctca 299  Q
    ||||||||||||||||||||||| |||||| ||||||| || |||||||| | ||| ||||||||||  ||||||||||||||||||| ||||| |||||    
T  36975929 taggagtcccacatcgagtagatcaaagtgtttgatgtggtatttaagtcataaggctctcccacctgttggactagtcttttgggttaggctctcctca 36976028  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| ||||||||||    
T  36976029 tgggcttaaatcctaac 36976045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 36975240 - 36975345
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||| | ||| ||||||| ||| || |||||||||||||||||||||| | |||    
T  36975240 taggagtcccacatcgagtagattaaagtgtttgatgtagtatttaagtcataaggctctcccatctattgaactagtcttttgggttgggctctcttca 36975339  T
Q  300 tgggct 305  Q
    ||||||    
T  36975340 tgggct 36975345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 10567342 - 10567458
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||||| ||||| || ||||||||||||||  |  ||||| | ||||||||||||||||| || |||||||||||||||||||||| |||||    
T  10567342 taggagtcccacattgagtatatcaaagtgcttgatgtgatacttaaggcatgaggttctcccacctattgcactagtcttttgggttgggctctcctca 10567441  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  10567442 tgggcttaagtcctaac 10567458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 15173570 - 15173457
Alignment:
Q  204 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctat-ggactagtcttttgggttgggctcacctcatgg 302  Q
    |||||||||| || |||| | |||||||||||||| ||  ||||  | ||||| |||||||||| | |||||||||||||||||||||||| ||||||||    
T  15173570 gagtcccacaccgggtagctaaaagtgcttgatgtggtacttaacccatgaggctctcccaccttttggactagtcttttgggttgggctctcctcatgg 15173471  T
Q  303 gctaaaatcctaac 316  Q
    ||| || |||||||    
T  15173470 gcttaagtcctaac 15173457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 22587080 - 22586967
Alignment:
Q  204 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctat-ggactagtcttttgggttgggctcacctcatgg 302  Q
    |||||||||||||||||  | |||||| ||||||||||  ||||| | ||||| |||| ||||||| |||||||||||||||||| |||||  |||||||    
T  22587080 gagtcccacatcgagtaactaaaagtgtttgatgtagtacttaagccatgaggctctcacacctattggactagtcttttgggtttggctcttctcatgg 22586981  T
Q  303 gctaaaatcctaac 316  Q
    ||| || |||||||    
T  22586980 gcttaagtcctaac 22586967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 39570010 - 39569918
Alignment:
Q  225 aaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 316  Q
    |||||||||||||||||  ||||  | ||||||||| ||||||| ||||||||||| |||| |||  ||| |||||||| || || |||||||    
T  39570010 aaagtgcttgatgtagtacttaaaccttgaggttcttccacctattggactagtctcttggattgaactctcctcatggacttaagtcctaac 39569918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 32024953 - 32025069
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  32024953 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 32025052  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  32025053 tgggcttaagtcctaac 32025069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 32025249 - 32025365
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  32025249 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 32025348  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  32025349 tgggcttaagtcctaac 32025365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 32025545 - 32025661
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  32025545 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 32025644  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  32025645 tgggcttaagtcctaac 32025661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 201 - 302
Target Start/End: Complemental strand, 31412510 - 31412408
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    ||||||||||||||||||||||| ||| |||||||||| ||  ||||| ||||||||||||||||||| |  |||||||||||||||||| ||| |||||    
T  31412510 taggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccgtgaggttctcccacctattcaactagtcttttgggttggactctcctca 31412411  T
Q  300 tgg 302  Q
    |||    
T  31412410 tgg 31412408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 9448741 - 9448648
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctc 293  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| |||||||||||||||    
T  9448741 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctc 9448648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 51865811 - 51865915
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    |||||||||||||| |||||||  | |||| ||||||| ||  ||||||| ||| ||||||||||||| | |||||||||||  ||||||| || |||||    
T  51865811 taggagtcccacatagagtagaacatagtgtttgatgtggtacttaagtcatgaagttctcccacctattagactagtctttcaggttggg-tctcctca 51865909  T
Q  300 tgggct 305  Q
    ||||||    
T  51865910 tgggct 51865915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 310
Target Start/End: Complemental strand, 4663045 - 4662937
Alignment:
Q  204 gagtcccacatcgagtagattaaagtgcttgatgtagt-gtttaagtcgtgaggttctcccacct-atggactagtcttttgggttgggctcacctcatg 301  Q
    ||||| |||||| |||||||||||||||||||||| ||  |||| ||| |||||||||||||| | ||| | | ||||| || ||||||||| ||| |||    
T  4663045 gagtctcacatcaagtagattaaagtgcttgatgtggtattttaggtcatgaggttctcccacttaatgaaatggtcttctgcgttgggctctccttatg 4662946  T
Q  302 ggctaaaat 310  Q
    |||| ||||    
T  4662945 ggcttaaat 4662937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 34228498 - 34228434
Alignment:
Q  252 tgaggttctcccaccta-tggactagtcttttgggttgggctcacctcatgggctaaaatcctaa 315  Q
    ||||| |||||||| || ||||||||||||||||||||| ||| |||||||| || || ||||||    
T  34228498 tgaggctctcccacttaatggactagtcttttgggttggactctcctcatggacttaagtcctaa 34228434  T

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Target: scaffold0251 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 12603 - 12708
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    ||||||||||||||||||||||| ||||||||||||||  |  ||||| | ||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  12603 taggagtcccacatcgagtagatcaaagtgcttgatgtgttacttaagccatgaggttcttccacctattggactagtcttttgggttgggctctcctca 12702  T
Q  300 tgggct 305  Q
    ||||||    
T  12703 tgggct 12708  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 19987942 - 19988044
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    ||||||||||||||||||||||| ||| |||||||||| ||  ||||| | ||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  19987942 taggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccatgaggttctcccacctattggactagtcttctgggttgggctctcctca 19988041  T
Q  300 tgg 302  Q
    |||    
T  19988042 tgg 19988044  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 19987648 - 19987764
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctca 299  Q
    ||||||||||||||||||||||| ||| || ||||||| ||  ||||| | ||||||||||||||||| |||||||||||| |||||| ||||| |||||    
T  19987648 taggagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcccacctattggactagtcttctgggttaggctctcctca 19987747  T
Q  300 tgggctaaaatcctaac 316  Q
    ||| || || |||||||    
T  19987748 tggacttaagtcctaac 19987764  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 7833857 - 7833756
Alignment:
Q  216 gagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta-tggactagtcttttgggttgggctcacctcatgggctaaaatccta 314  Q
    |||||||| |||||||||||||| ||  ||||||| ||||| ||||||||||| |||||||||||||||||||||| |  ||||||||||| || |||||    
T  7833857 gagtagataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaatggactagtcttttgggttgggtttccctcatgggcttaagtccta 7833758  T
Q  315 ac 316  Q
    ||    
T  7833757 ac 7833756  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 8107531 - 8107426
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctccca-cctatggactagtcttttgggttgggctcacctca 299  Q
    ||||||||||||||||||||||| |||||||||||||| ||  |||||   ||||||||||||| ||  || ||||| |||||| ||||||||| ||| |    
T  8107531 taggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaagctatgaggttctcccatccattgaactagccttttgagttgggctctcctta 8107432  T
Q  300 tgggct 305  Q
    ||||||    
T  8107431 tgggct 8107426  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 18936201 - 18936242
Alignment:
Q  274 tagtcttttgggttgggctcacctcatgggctaaaatcctaa 315  Q
    |||||||||||||||||||| ||||||||||| || ||||||    
T  18936201 tagtcttttgggttgggctctcctcatgggcttaagtcctaa 18936242  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 38978716 - 38978805
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacct-atggactagtcttttgggttgg 289  Q
    |||||||||||||| |||||||| |||||| ||||||| ||  ||||  | ||||| ||| |||||| ||||| ||||||||| ||||||    
T  38978716 taggagtcccacatggagtagataaaagtgtttgatgtggtacttaaaccatgaggctcttccacctaatggattagtctttttggttgg 38978805  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 11028758 - 11028873
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacct-atggactagtcttttgggttgggctcacctca 299  Q
    |||||||| ||||||||||| || |||||| |||||||  | |||||  | ||||| |||| ||||| |||||||| | ||||||||||| |||  ||||    
T  11028758 taggagtctcacatcgagtaaataaaagtgtttgatgtgatatttaaaccatgaggatctctcacctaatggacta-ttttttgggttggtctcttctca 11028856  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  11028857 tgggcttaagtcctaac 11028873  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 3870886 - 3870770
Alignment:
Q  201 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacc-tatggactagtcttttgggttgggctcacctca 299  Q
    |||||||| ||||||||||||||| || |||||||||| ||  |||||    |||| ||||||||| | ||||||||||||||||||||||||| |||||    
T  3870886 taggagtctcacatcgagtagatttaaatgcttgatgtggtacttaagctacgaggctctcccaccatttggactagtcttttgggttgggctctcctca 3870787  T
Q  300 tgggctaaaatcctaac 316  Q
    |||||| || |||||||    
T  3870786 tgggcttaagtcctaac 3870770  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 7407878 - 7407943
Alignment:
Q  252 tgaggttctcccacctat-ggactagtcttttgggttgggctcacctcatgggctaaaatcctaac 316  Q
    |||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| || |||||||    
T  7407878 tgaggttctcccacctattggactagttttttgggttgggctctcctcatgggcttaagtcctaac 7407943  T

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