View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14549_low_3 (Length: 363)
Name: NF14549_low_3
Description: NF14549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14549_low_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 26454660 - 26455013
Alignment:
| Q |
13 |
atcatcacgaccacatctcttgtcttcatatgttttcatcattttggattatttct---tcttcaccatcaattatcattatgtcaatactttcatcatc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454660 |
atcatcacgaccacatctcttgtcttcatatgttgtcatcattttggattatttcttcttcttcaccatcaattatcattatgtcaatactttcatcatc |
26454759 |
T |
|
| Q |
110 |
aacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtggccgggattttggttgacaaatggccaatttgta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454760 |
aacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtggccgggattttggttgacaaatggccaatttgta |
26454859 |
T |
|
| Q |
210 |
tctcattcttgatacaagcttctttgttcgtttgagttgtttcttggctcaccttcagctccttaagattgttttgtgtggatttcatgaacttgcccat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454860 |
tctcattcttgatacaagcttctttgttcttttgagttgtttcttggctcaccttcagctccttaagattgttttgtgtggatttcatgaacttgcccat |
26454959 |
T |
|
| Q |
310 |
aatctcatctaacttaaagggtttcctttaatgctagttgggtggaggtacttg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454960 |
aatctcatctaacttaaagggtttcctttaatgctagttgggtggaggtacttg |
26455013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University