View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1454_high_3 (Length: 258)
Name: NF1454_high_3
Description: NF1454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1454_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 595754 - 595983
Alignment:
| Q |
30 |
tggtgttcaatatcaatcaaatcttccttttcgctctttacatttt-ttggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttct |
128 |
Q |
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| T |
595754 |
tggtgttcaatatcaatcaaatcttccttttcgctctttacatttttttggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttct |
595853 |
T |
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| Q |
129 |
ttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggnnnnnnnnaatcgatattcaaatggatgcttataacaacaaatgattgtaaa |
228 |
Q |
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| T |
595854 |
ttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggttttttttaatcgatattcaaatggatgcttataacaacaaatgattgtaaa |
595953 |
T |
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| Q |
229 |
attcatattcatggtagttattatatgata |
258 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
595954 |
attcatattcatggtagttattatatgata |
595983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 58 - 257
Target Start/End: Original strand, 17373377 - 17373577
Alignment:
| Q |
58 |
tttcgctctttacatttt-ttggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaaagctaaatggaggcat |
156 |
Q |
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| T |
17373377 |
tttcgctctttacatttttttggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaaagctaaatggaagcat |
17373476 |
T |
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| Q |
157 |
ttcaagcggacaaatggaggnnnnnnnnaatcgatattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatga |
256 |
Q |
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| T |
17373477 |
ttcaagtagacaaatggaggttttttttaatcgatattcaaatggatgcttatagcaacaaatgattgtaaaattcatattcatggtagttattatatga |
17373576 |
T |
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| Q |
257 |
t |
257 |
Q |
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| T |
17373577 |
t |
17373577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 7633103 - 7633021
Alignment:
| Q |
58 |
tttcgctctttacattttttggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
140 |
Q |
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| T |
7633103 |
tttcgctctttacattttttggtaaacaaatcccatactttatgattagtaaaaataaaaaatctcgttctttatgatattaa |
7633021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 33006051 - 33005987
Alignment:
| Q |
190 |
atattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatgat |
257 |
Q |
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| T |
33006051 |
atattcaaatggatgcttataacaacaaatgattgtaaaattca---tcatggtagttattatatgat |
33005987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 33006205 - 33006147
Alignment:
| Q |
81 |
aaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
140 |
Q |
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| T |
33006205 |
aaacaaatctcatt-tttatgattagtcaaagaaaaagatctcgttctttatgatattaa |
33006147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 7632928 - 7632859
Alignment:
| Q |
185 |
aatcgatattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatgat |
257 |
Q |
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| T |
7632928 |
aatcgattttcaaatggttgcttatgacaa---atgattgtaaaattcatattcatggtggttattttatgat |
7632859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 15290219 - 15290303
Alignment:
| Q |
58 |
tttcgctctttaca--ttttttggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
140 |
Q |
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| T |
15290219 |
tttcgctctttactatttttttggtgaacaaatctcattctttatcattagtaaaaaaaaaaatactcgttctttatgatattaa |
15290303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 15290410 - 15290443
Alignment:
| Q |
214 |
acaaatgattgtaaaattcatattcatggtagtt |
247 |
Q |
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| T |
15290410 |
acaaatgattgtaaaattcatattcatggtagtt |
15290443 |
T |
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