View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1454_low_2 (Length: 578)
Name: NF1454_low_2
Description: NF1454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1454_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 328 - 566
Target Start/End: Complemental strand, 11825286 - 11825046
Alignment:
| Q |
328 |
ttagtaaggtttttaactgccaaagatcgagtggcttgagatttgatatatgaagatataatttgaaatatatagtttgagagctataaatttccaaaac |
427 |
Q |
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| T |
11825286 |
ttagtaaggttcttaactgccaaagattgagtggcttgagatttgatatatgaagagataatttgaaatatatagtttgagagctataaatttccaaaac |
11825187 |
T |
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| Q |
428 |
ccttaccaaaatcgtatttacataattcg--tgcatgtgaagatagatatcattcacatgaagatatatatcttcgtgtgaatgatattgtgactctctc |
525 |
Q |
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| T |
11825186 |
ccttaccgaaatcgtatttacatcattcgtatatatgtgaagatagatatcattcacatgaagatatatatcttcgtgtgaatgatattgtgattctctc |
11825087 |
T |
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| Q |
526 |
tttaaatagccaataccaactgcattattgtgaataatatt |
566 |
Q |
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| T |
11825086 |
tttaaatagccaataccaacggcattattgtgaatgatatt |
11825046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 95 - 285
Target Start/End: Complemental strand, 11825522 - 11825332
Alignment:
| Q |
95 |
cgtattttgcggaataagctaaattgcgagtctaagtcaacggaatggttccagaactaaatatatgaattgggtaggcttgagttttacaaacgtattg |
194 |
Q |
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| T |
11825522 |
cgtattttgcggaataagttaaattgcgagtctaagtcaacggaatggttccagaactaaatatatgaattcggtaggcttgagttttacaaacgtgttg |
11825423 |
T |
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| Q |
195 |
attttttcgacacaaaatctaggttgtagcaatatgatccaataaatcaaccaaccaaatgaataatattagaatcctgtactaactaata |
285 |
Q |
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| T |
11825422 |
attttttcgacacaaaatctaggttgtagcaatatgatccaataaatcaaccaaccaaatgaataatattagaatcatgtactaactaata |
11825332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 513
Target Start/End: Original strand, 11825099 - 11825140
Alignment:
| Q |
472 |
atatcattcacatgaagatatatatcttcgtgtgaatgatat |
513 |
Q |
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| T |
11825099 |
atatcattcacacgaagatatatatcttcatgtgaatgatat |
11825140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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