View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1454_low_3 (Length: 346)
Name: NF1454_low_3
Description: NF1454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1454_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 102 - 336
Target Start/End: Complemental strand, 26497898 - 26497664
Alignment:
| Q |
102 |
atgagaggagttatgaacttatgatatgaatgattattaaatatttttcatcattaattatctccatcacattcaaagaaggttggatctcattatctct |
201 |
Q |
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| T |
26497898 |
atgagaggagttatgaacttatgatatgaatgattattaaatatttttcatcattaattatctctatcacattcaaagaaggttggatctcattatctct |
26497799 |
T |
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| Q |
202 |
catcnnnnnnncttattgctaacattatgtgagtacttctgtgtcacgccatagctttactcttttaattcctatatgttccttcaatggataatagaat |
301 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26497798 |
catctttttttcttattgctaacattatgtgagtacttctgtgtcacgccatagctttactcttttaattcctatatgttccttcaatggataatagaat |
26497699 |
T |
|
| Q |
302 |
tagaaagaacacaacctttcttcagcatagaatta |
336 |
Q |
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| T |
26497698 |
tagaaagaacacaacctttcttcagcataaaatta |
26497664 |
T |
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