View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1454_low_5 (Length: 313)
Name: NF1454_low_5
Description: NF1454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1454_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 28 - 303
Target Start/End: Complemental strand, 43225621 - 43225346
Alignment:
| Q |
28 |
caacagtcaatttccttgaagaagagacgcctttcatccctccaacggtaaacaatggtggcttgcatgactattttgaaagtgtagctgggaggttact |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225621 |
caacagtcaatttccttgaagaagagacgcctttcatccctccaacggtaaacaatggtggcttgcatgactattttgaaagtgtagctgggaggttact |
43225522 |
T |
|
| Q |
128 |
tggtgttgataaaattaaagactggcagccgacggtgggatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatg |
227 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225521 |
tggtgttgataaaattaaagaccagcagccgacggtgggatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatg |
43225422 |
T |
|
| Q |
228 |
gaggatgtctcagttgaacgtcttccgtcgggacactcaccctatttcaaagtcaacgaagatgcacttccctatg |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43225421 |
gaggatgtctcagttgaacgtcttccgtcgggacactcaccctatttcaaagtcaacgaagatgcacttccttatg |
43225346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 28 - 303
Target Start/End: Original strand, 41652308 - 41652583
Alignment:
| Q |
28 |
caacagtcaatttccttgaagaagagacgcctttcatccctccaacggtaaacaatggtggcttgcatgactattttgaaagtgtagctgggaggttact |
127 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
41652308 |
caacagtcaatttccttgaagaagagaagcctttcatccctccaactataaacaatggtggcttgcatgaccattttcaaagtgtcgctgggaggttact |
41652407 |
T |
|
| Q |
128 |
tggtgttgataaaattaaagactggcagccgacggtgggatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatg |
227 |
Q |
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||||||||||||| |||| ||| |||||| | | |||||||||||||||| || |||||||||| |||| | ||||||||||||||||||||||||||| |
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| T |
41652408 |
tggtgttgataaagttaaggaccagcagccaatgttgggatcagaagacttcgccttctatcaagcggctttgcctggatacatcttcctcctcggaatg |
41652507 |
T |
|
| Q |
228 |
gaggatgtctcagttgaacgtcttccgtcgggacactcaccctatttcaaagtcaacgaagatgcacttccctatg |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
41652508 |
gaggatgtctcagttgaacgtcttccgtcgggacactcaccctattacaaagtcaacgaagatgcacttccttatg |
41652583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 28 - 298
Target Start/End: Complemental strand, 43202904 - 43202634
Alignment:
| Q |
28 |
caacagtcaatttccttgaagaagagacgcctttcatccctccaacggtaaacaatggtggcttgcatgactattttgaaagtgtagctgggaggttact |
127 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||| || ||||| || || |
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| T |
43202904 |
caacagtcagcttccttgaagaagagaagcctttcttccctccaactgtaaacgatggtggcttgcatgactattttcaaagtgtcgccgggagtttgct |
43202805 |
T |
|
| Q |
128 |
tggtgttgataaaattaaagactggcagccgacggtgggatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatg |
227 |
Q |
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|||| ||||||| |||||| | ||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43202804 |
cggtgctgataaagttaaaggcatgcaaccaatgatgggatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatg |
43202705 |
T |
|
| Q |
228 |
gaggatgtctcagttgaacgtcttccgtcgggacactcaccctatttcaaagtcaacgaagatgcacttcc |
298 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43202704 |
gaagatgtctcagttgaacgtcttccgtcgggacactcaccctatttcaaagtcaacgaagatgtacttcc |
43202634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 76 - 303
Target Start/End: Original strand, 41658484 - 41658711
Alignment:
| Q |
76 |
taaacaatggtggcttgcatgactattttgaaagtgtagctgggaggttacttggtgttgataaaattaaagactggcagccgacggtgggatcagaaga |
175 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||| |||||||| || || || ||||||||| |||| | | || | | ||||||||||||| |
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| T |
41658484 |
taaacaatgatagcttgcatgactattttcaaagtgttgctgggagtttgctcggcgttgataaagttaagggccatcatctattgatgggatcagaaga |
41658583 |
T |
|
| Q |
176 |
ctttgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtcttccgtcgggacactcaccctatttc |
275 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||| || |||||||||| |||||||| |||||||||||| ||| | ||||| ||||||||| |
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| T |
41658584 |
ctttgcattctatcaagaggctatgcctggatacgtcttcatcgtcggaatggaagatgtctctgttgaacgtcttaggtcatggcactcgccctatttc |
41658683 |
T |
|
| Q |
276 |
aaagtcaacgaagatgcacttccctatg |
303 |
Q |
| |
|
|||||||||||||||| |||||| |||| |
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| T |
41658684 |
aaagtcaacgaagatgtacttccttatg |
41658711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 64 - 291
Target Start/End: Complemental strand, 43210955 - 43210728
Alignment:
| Q |
64 |
tccctccaacggtaaacaatggtggcttgcatgactattttgaaagtgtagctgggaggttacttggtgttgataaaattaaagactggcagccgacggt |
163 |
Q |
| |
|
|||||||||| ||||||||| | ||||||| ||||||||| ||||||| |||||||| || || || |||||||| |||||| | || | | | |
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|
| T |
43210955 |
tccctccaactataaacaatgatagcttgcacgactattttcaaagtgttgctgggagtttgctcggcattgataaagttaaaggccatcatctattgat |
43210856 |
T |
|
| Q |
164 |
gggatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtcttccgtcgggacac |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||| |||||||| |||||||||||| ||| | ||| |
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| T |
43210855 |
gggatcagaagactttgcattctatcaagaggctatgcctggatacgtcttcatcgtcggaatggaagatgtctctgttgaacgtcttaggtcatggcac |
43210756 |
T |
|
| Q |
264 |
tcaccctatttcaaagtcaacgaagatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
43210755 |
tcaccctatttcaaagtcaacgaagatg |
43210728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 43216818 - 43216758
Alignment:
| Q |
231 |
gatgtctcagttgaacgtcttccgtcgggacactcaccctatttcaaagtcaacgaagatg |
291 |
Q |
| |
|
|||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||| |
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|
| T |
43216818 |
gatgtctctgttgaacgtcttaggtcatggcactcaccctatttcaaagtcaacgaagatg |
43216758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 42918910 - 42918999
Alignment:
| Q |
163 |
tgggatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtcttc |
252 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| | || ||||||| ||||||||||| |||||| ||||||| ||||||| ||||| |
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| T |
42918910 |
tgggatcataagacttttcattctatcaagaggctttaccgggatacagcttcctcctcgaaatggaagatgtctttgttgaacatcttc |
42918999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 45289381 - 45289293
Alignment:
| Q |
163 |
tgggatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtcttc |
252 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | || ||||||| ||| ||||||| |||||| |||||||| |||||| ||||| |
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|
| T |
45289381 |
tgggatcagaagacttttcattctatcaagaggctttaccgggatacagctt-ctcctcgaaatggaagatgtctctattgaacatcttc |
45289293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 19248910 - 19248944
Alignment:
| Q |
163 |
tgggatcagaagactttgcattctatcaagaggct |
197 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19248910 |
tgggatcagaagacttttcattctatcaagaggct |
19248944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 19322094 - 19322128
Alignment:
| Q |
163 |
tgggatcagaagactttgcattctatcaagaggct |
197 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19322094 |
tgggatcagaagacttttcattctatcaagaggct |
19322128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 5069408 - 5069356
Alignment:
| Q |
163 |
tgggatcagaagactttgcattctatcaagaggctattcctggatacatcttc |
215 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| || ||||||||| ||||| |
|
|
| T |
5069408 |
tgggatccgaagacttttcattctatcaagaggtcatacctggatacttcttc |
5069356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 34322112 - 34322198
Alignment:
| Q |
166 |
gatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtcttc |
252 |
Q |
| |
|
||||| |||||||| |||||||| |||| ||| | || ||||||| |||||||||||||||||| ||| |||| ||||||| ||||| |
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|
| T |
34322112 |
gatcataagacttttcattctataaagaagctttaccgggatacaacttcctcctcggaatggaagatatctctgttgaacatcttc |
34322198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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