View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14550_high_3 (Length: 325)

Name: NF14550_high_3
Description: NF14550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14550_high_3
NF14550_high_3
[»] chr4 (7 HSPs)
chr4 (1-264)||(52803757-52804015)
chr4 (279-315)||(530800-530836)
chr4 (279-315)||(1299043-1299079)
chr4 (279-315)||(18417661-18417697)
chr4 (279-315)||(24915798-24915834)
chr4 (279-315)||(43486204-43486240)
chr4 (279-315)||(52824243-52824279)
[»] chr7 (10 HSPs)
chr7 (279-315)||(30259070-30259106)
chr7 (279-315)||(10936601-10936637)
chr7 (279-315)||(20184242-20184278)
chr7 (279-315)||(24836151-24836187)
chr7 (279-315)||(31231747-31231783)
chr7 (279-315)||(33721831-33721867)
chr7 (279-315)||(34052410-34052446)
chr7 (279-315)||(35339282-35339318)
chr7 (279-315)||(35665747-35665783)
chr7 (279-315)||(38528543-38528579)
[»] chr6 (5 HSPs)
chr6 (279-315)||(885516-885552)
chr6 (279-315)||(7808740-7808776)
chr6 (279-315)||(15546763-15546799)
chr6 (279-315)||(21379945-21379981)
chr6 (279-315)||(21380072-21380108)
[»] chr8 (6 HSPs)
chr8 (277-315)||(24741825-24741863)
chr8 (279-315)||(8210327-8210363)
chr8 (279-315)||(15882332-15882368)
chr8 (279-315)||(24211409-24211445)
chr8 (279-315)||(37114242-37114278)
chr8 (279-315)||(40891144-40891180)
[»] chr3 (16 HSPs)
chr3 (278-315)||(8831743-8831780)
chr3 (277-309)||(1476553-1476585)
chr3 (279-315)||(1476682-1476718)
chr3 (279-315)||(10017118-10017154)
chr3 (279-315)||(10254572-10254608)
chr3 (279-315)||(21969161-21969197)
chr3 (279-315)||(21969288-21969324)
chr3 (279-315)||(21991597-21991633)
chr3 (279-315)||(21991724-21991760)
chr3 (279-315)||(32237525-32237561)
chr3 (279-315)||(39850476-39850512)
chr3 (279-315)||(43639213-43639249)
chr3 (279-315)||(45487803-45487839)
chr3 (279-315)||(45487930-45487966)
chr3 (279-315)||(45713034-45713070)
chr3 (279-315)||(50099565-50099601)
[»] scaffold0122 (1 HSPs)
scaffold0122 (279-315)||(45965-46001)
[»] scaffold0069 (1 HSPs)
scaffold0069 (279-315)||(26409-26445)
[»] chr5 (2 HSPs)
chr5 (279-315)||(20476562-20476598)
chr5 (279-315)||(24397377-24397413)
[»] chr2 (7 HSPs)
chr2 (279-315)||(7737196-7737232)
chr2 (279-315)||(9281351-9281387)
chr2 (279-315)||(16705737-16705773)
chr2 (279-315)||(24101836-24101872)
chr2 (279-315)||(34455889-34455925)
chr2 (279-315)||(34490587-34490623)
chr2 (279-315)||(45408756-45408792)
[»] chr1 (6 HSPs)
chr1 (279-315)||(5189473-5189509)
chr1 (279-315)||(9978183-9978219)
chr1 (279-315)||(19797112-19797148)
chr1 (279-315)||(27240928-27240964)
chr1 (279-315)||(40647249-40647285)
chr1 (279-315)||(49285106-49285142)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 52804015 - 52803757
Alignment:
Q  1 ataatagaaattgggatagtgggtttattatggattcttcactgcctaagagtatccaagttaattacttcatagaatgagtaatttgggtattgagggt 100  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52804015 ataatagaaattgggatagtgggtttat---ggattcttcactgcctaagagtatccaagttaattacttcatagaatgagtaatttgggtattgagggt 52803919  T
Q  101 tttcttgtaaaattgtccacatggtgtaaaatgggatagttcgtgtaatttctaaatttcacagtagtatgtatttgnnnnnnnnnnnnnccttgttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||             ||||||||||    
T  52803918 tttcttgtaaaattgtccacatggtgtaaaatgggatagtttgtgtaatttctaaatttcacagtagtatgtatttg--tttttttttttccttgttcct 52803821  T
Q  201 tctcttgtaaccattatgttatgtcaatcaatttttggagtttaattctaatatagtgccatga 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52803820 tctcttgtaaccattatgttatgtcaatcaatttttggagtttaattctaatctagtgccatga 52803757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 530836 - 530800
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  530836 aaaacttaggtacaattccttaggtgcttttcgtatg 530800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 1299079 - 1299043
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  1299079 aaaacttaggtacaattccttaggtgcttttcttatg 1299043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 18417661 - 18417697
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  18417661 aaaacttaggtacaattccttaggtgcttttcgtatg 18417697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 24915798 - 24915834
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  24915798 aaaacttaggtacaattccttaggtgcttttcgtatg 24915834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 43486204 - 43486240
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  43486204 aaaacttaggtacaattccttaggtacttttcctatg 43486240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 52824243 - 52824279
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  52824243 aaaacttaggtacaattccttaggtgcttttcgtatg 52824279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 30259070 - 30259106
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||||||||    
T  30259070 aaaacttaggtacaattccttaggtgcttttcctatg 30259106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 10936637 - 10936601
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  10936637 aaaacttaggtacaattccttaggtgcttttcgtatg 10936601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 20184242 - 20184278
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  20184242 aaaacttaggtacaattccttaggtgcttttcgtatg 20184278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 24836187 - 24836151
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  24836187 aaaacttaggtacaattccttaggtgcttttcgtatg 24836151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 31231783 - 31231747
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  31231783 aaaacttaggtacaattccttaggtgcttttcgtatg 31231747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 33721831 - 33721867
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  33721831 aaaacttaggtacaattccttaggtgcttttcgtatg 33721867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 34052446 - 34052410
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  34052446 aaaacttaggtacaattccttaggtgcttttcgtatg 34052410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 35339282 - 35339318
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  35339282 aaaacttaggtacaattccttaggtgcttttcgtatg 35339318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 35665783 - 35665747
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  35665783 aaaacttaggtacaattccttaggtgcttttcgtatg 35665747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 38528579 - 38528543
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  38528579 aaaacttaggtacaattccttaggtgcttttcgtatg 38528543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 885552 - 885516
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||||||||    
T  885552 aaaacttaggtacaattccttaggtgcttttcctatg 885516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 7808776 - 7808740
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  7808776 aaaacttaggtacaattccttaggtgcttttcgtatg 7808740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 15546799 - 15546763
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  15546799 aaaacttaggtacaattccttaggtgcttttcgtatg 15546763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 21379945 - 21379981
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  21379945 aaaacttaggtacaattccttaggtgcttttcgtatg 21379981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 21380108 - 21380072
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  21380108 aaaacttaggtacaattccttaggtgcttttcgtatg 21380072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 24741825 - 24741863
Alignment:
Q  277 aaaaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  24741825 aaaaaacttaggtacaattccttaggtgcttttcgtatg 24741863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 8210327 - 8210363
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  8210327 aaaacttaggtacaattccttaggtgcttttcgtatg 8210363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 15882368 - 15882332
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  15882368 aaaacttaggtacaattccttaggtgcttttcgtatg 15882332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 24211445 - 24211409
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  24211445 aaaacttaggtacaattccttaggtgcttttcgtatg 24211409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 37114242 - 37114278
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  37114242 aaaacttaggtacaattccttaggtgcttttcgtatg 37114278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 40891180 - 40891144
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  40891180 aaaacttaggtacaattccttaggtgcttttcgtatg 40891144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 8831743 - 8831780
Alignment:
Q  278 aaaaactttggtacaattccttaggtgcttttcctatg 315  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  8831743 aaaaacttaggtacaattccttaggtgcttttcgtatg 8831780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 1476553 - 1476585
Alignment:
Q  277 aaaaaactttggtacaattccttaggtgctttt 309  Q
    ||||||||| |||||||||||||||||||||||    
T  1476553 aaaaaacttaggtacaattccttaggtgctttt 1476585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 1476718 - 1476682
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  1476718 aaaacttaggtacaattccttaggtgcttttcatatg 1476682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 10017118 - 10017154
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  10017118 aaaacttaggtacaattccttaggtgcttttcatatg 10017154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 10254572 - 10254608
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  10254572 aaaacttaggtacaattccttaggtgcttttcatatg 10254608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 21969161 - 21969197
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  21969161 aaaacttaggtacaattccttaggtgcttttcgtatg 21969197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 21969324 - 21969288
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  21969324 aaaacttaggtacaattccttaggtgcttttcgtatg 21969288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 21991597 - 21991633
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  21991597 aaaacttaggtacaattccttaggtgcttttcgtatg 21991633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 21991760 - 21991724
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  21991760 aaaacttaggtacaattccttaggtgcttttcgtatg 21991724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 32237561 - 32237525
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  32237561 aaaacttaggtacaattccttaggtgcttttcgtatg 32237525  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 39850512 - 39850476
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  39850512 aaaacttaggtacaattccttaggtgcttttcgtatg 39850476  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 43639249 - 43639213
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  43639249 aaaacttaggtacaattccttaggtgcttttcgtatg 43639213  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 45487803 - 45487839
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  45487803 aaaacttaggtacaattccttaggtgcttttcgtatg 45487839  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 45487966 - 45487930
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  45487966 aaaacttaggtacaattccttaggtgcttttcgtatg 45487930  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 45713070 - 45713034
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  45713070 aaaacttaggtacaattccttaggtgcttttcgtatg 45713034  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 50099601 - 50099565
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  50099601 aaaacttaggtacaattccttaggtgcttttcgtatg 50099565  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 46001 - 45965
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  46001 aaaacttaggtacaattccttaggtgcttttcttatg 45965  T

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Target: scaffold0069 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 26409 - 26445
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  26409 aaaacttaggtacaattccttaggtgcttttcgtatg 26445  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 20476598 - 20476562
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  20476598 aaaacttaggtacaattccttaggtgcttttcgtatg 20476562  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 24397413 - 24397377
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  24397413 aaaacttaggtacaattccttaggtgcttttcgtatg 24397377  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 7737232 - 7737196
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  7737232 aaaacttaggtacaattccttaggtgcttttcgtatg 7737196  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 9281351 - 9281387
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  9281351 aaaactttggtacaattccttaggtacttttcatatg 9281387  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 16705737 - 16705773
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  16705737 aaaacttaggtacaattccttaggtgcttttcgtatg 16705773  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 24101836 - 24101872
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  24101836 aaaacttaggtacaattccttaggtgcttttcgtatg 24101872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 34455889 - 34455925
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  34455889 aaaacttaggtacaattccttaggtgcttttcgtatg 34455925  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 34490623 - 34490587
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  34490623 aaaacttaggtacaattccttaggtgcttttcgtatg 34490587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 45408792 - 45408756
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  45408792 aaaacttaggtacaattccttaggtgcttttcgtatg 45408756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 5189473 - 5189509
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  5189473 aaaacttaggtacaattccttaggtgcttttcgtatg 5189509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 9978219 - 9978183
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  9978219 aaaacttaggtacaattccttaggtgcttttcgtatg 9978183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 19797148 - 19797112
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  19797148 aaaacttaggtacaattccttaggtgcttttcgtatg 19797112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 27240928 - 27240964
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  27240928 aaaacttaggtacaattccttaggtgcttttcgtatg 27240964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 40647285 - 40647249
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  40647285 aaaacttaggtacaattccttaggtgcttttcgtatg 40647249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 49285142 - 49285106
Alignment:
Q  279 aaaactttggtacaattccttaggtgcttttcctatg 315  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  49285142 aaaacttaggtacaattccttaggtgcttttcgtatg 49285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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