View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14551_high_4 (Length: 228)

Name: NF14551_high_4
Description: NF14551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14551_high_4
NF14551_high_4
[»] chr7 (22 HSPs)
chr7 (1-228)||(2234453-2234680)
chr7 (1-228)||(16539235-16539462)
chr7 (1-228)||(16626200-16626427)
chr7 (1-228)||(42571990-42572217)
chr7 (1-228)||(19309434-19309661)
chr7 (8-228)||(21080862-21081082)
chr7 (1-228)||(17495448-17495675)
chr7 (1-228)||(17557539-17557766)
chr7 (1-228)||(32212476-32212704)
chr7 (5-228)||(12934446-12934669)
chr7 (1-228)||(43892903-43893141)
chr7 (1-130)||(47177040-47177169)
chr7 (7-122)||(33238053-33238168)
chr7 (7-122)||(33243230-33243345)
chr7 (7-122)||(47993851-47993966)
chr7 (7-122)||(47999026-47999141)
chr7 (173-228)||(33238286-33238341)
chr7 (173-228)||(47994084-47994139)
chr7 (173-228)||(47999259-47999314)
chr7 (4-59)||(9973510-9973565)
chr7 (173-228)||(33243463-33243518)
chr7 (198-228)||(47176973-47177003)
[»] chr8 (15 HSPs)
chr8 (1-228)||(24884757-24884985)
chr8 (1-228)||(43999053-43999280)
chr8 (1-226)||(17955614-17955839)
chr8 (1-228)||(21643904-21644131)
chr8 (37-228)||(21643464-21643652)
chr8 (1-185)||(42514240-42514424)
chr8 (136-228)||(21642714-21642806)
chr8 (136-228)||(21643089-21643181)
chr8 (136-228)||(21641589-21641681)
chr8 (136-228)||(21641964-21642056)
chr8 (136-228)||(21642339-21642431)
chr8 (7-122)||(32015751-32015866)
chr8 (173-228)||(32010810-32010865)
chr8 (173-228)||(32015984-32016039)
chr8 (4-59)||(33616719-33616774)
[»] chr3 (22 HSPs)
chr3 (8-228)||(17357890-17358110)
chr3 (1-228)||(34128992-34129219)
chr3 (1-228)||(3476768-3476996)
chr3 (7-228)||(10321493-10321715)
chr3 (1-228)||(54270689-54270917)
chr3 (1-228)||(3482235-3482473)
chr3 (1-228)||(4117414-4117650)
chr3 (1-214)||(17368764-17368988)
chr3 (1-214)||(55128835-55129059)
chr3 (7-122)||(20090591-20090706)
chr3 (7-122)||(20095716-20095831)
chr3 (8-122)||(15762959-15763073)
chr3 (8-122)||(15768120-15768234)
chr3 (1-127)||(30341768-30341894)
chr3 (8-62)||(17364117-17364171)
chr3 (173-228)||(15762786-15762841)
chr3 (173-228)||(15767947-15768002)
chr3 (173-228)||(20090418-20090473)
chr3 (173-228)||(20095543-20095598)
chr3 (196-228)||(30338575-30338607)
chr3 (4-59)||(13022075-13022130)
chr3 (4-51)||(26962107-26962154)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-228)||(37055-37282)
[»] chr6 (15 HSPs)
chr6 (1-228)||(2817970-2818197)
chr6 (1-228)||(31981605-31981835)
chr6 (1-228)||(34375964-34376201)
chr6 (4-228)||(34142128-34142361)
chr6 (4-228)||(34154744-34154977)
chr6 (5-228)||(24192292-24192526)
chr6 (1-214)||(29491062-29491287)
chr6 (1-214)||(21396744-21396968)
chr6 (5-228)||(24191195-24191429)
chr6 (1-214)||(22703192-22703416)
chr6 (77-208)||(21401862-21402004)
chr6 (77-172)||(6728285-6728380)
chr6 (7-122)||(22698172-22698287)
chr6 (173-228)||(22697999-22698054)
chr6 (4-56)||(13605087-13605139)
[»] chr4 (27 HSPs)
chr4 (1-228)||(53797674-53797901)
chr4 (1-228)||(51019196-51019423)
chr4 (1-228)||(13710713-13710941)
chr4 (1-219)||(41393290-41393508)
chr4 (1-214)||(54991531-54991745)
chr4 (1-228)||(13695204-13695434)
chr4 (1-214)||(8980111-8980335)
chr4 (1-214)||(8985231-8985455)
chr4 (1-214)||(13700555-13700779)
chr4 (1-214)||(21299659-21299883)
chr4 (1-214)||(21304779-21305003)
chr4 (1-228)||(9763840-9764071)
chr4 (1-228)||(47046129-47046357)
chr4 (7-123)||(36354227-36354343)
chr4 (7-122)||(36359345-36359460)
chr4 (7-122)||(40004078-40004193)
chr4 (7-122)||(54348408-54348523)
chr4 (7-122)||(39999120-39999235)
chr4 (7-122)||(54343254-54343369)
chr4 (173-228)||(36354426-36354481)
chr4 (173-228)||(39999353-39999408)
chr4 (173-228)||(40004311-40004366)
chr4 (173-228)||(54343487-54343542)
chr4 (173-228)||(54348641-54348696)
chr4 (164-214)||(54990636-54990686)
chr4 (173-228)||(36359612-36359667)
chr4 (7-59)||(653094-653146)
[»] chr1 (18 HSPs)
chr1 (1-228)||(3584646-3584873)
chr1 (1-228)||(48246506-48246733)
chr1 (1-228)||(5730150-5730377)
chr1 (1-214)||(11250949-11251163)
chr1 (1-198)||(5725024-5725221)
chr1 (1-208)||(37404248-37404466)
chr1 (1-214)||(27716488-27716712)
chr1 (1-214)||(37409363-37409587)
chr1 (36-214)||(27711403-27711592)
chr1 (36-180)||(11387671-11387826)
chr1 (7-122)||(36684644-36684759)
chr1 (7-115)||(34318160-34318268)
chr1 (4-59)||(10106151-10106206)
chr1 (173-228)||(36684471-36684526)
chr1 (4-59)||(39747157-39747212)
chr1 (173-224)||(34318045-34318096)
chr1 (7-53)||(25188270-25188316)
chr1 (4-57)||(26651160-26651213)
[»] scaffold0594 (1 HSPs)
scaffold0594 (1-228)||(9031-9258)
[»] chr5 (16 HSPs)
chr5 (1-228)||(1413875-1414101)
chr5 (8-228)||(26709156-26709375)
chr5 (8-228)||(26978890-26979109)
chr5 (1-228)||(36253871-36254108)
chr5 (1-228)||(24776632-24776865)
chr5 (1-228)||(24771177-24771407)
chr5 (1-214)||(17510103-17510327)
chr5 (1-214)||(17504998-17505222)
chr5 (1-214)||(42019618-42019842)
chr5 (1-208)||(41858638-41858856)
chr5 (1-214)||(41853593-41853817)
chr5 (34-214)||(43579738-43579929)
chr5 (158-214)||(42024566-42024622)
chr5 (4-59)||(7805119-7805174)
chr5 (4-59)||(24435861-24435916)
chr5 (7-59)||(13582682-13582734)
[»] chr2 (15 HSPs)
chr2 (1-228)||(28751552-28751779)
chr2 (103-228)||(4163400-4163525)
chr2 (1-214)||(40392364-40392588)
chr2 (9-208)||(40518304-40518514)
chr2 (7-122)||(42723380-42723495)
chr2 (7-122)||(42728549-42728664)
chr2 (7-122)||(44096353-44096468)
chr2 (7-122)||(44754525-44754640)
chr2 (7-122)||(44759691-44759806)
chr2 (173-228)||(42728376-42728431)
chr2 (173-228)||(44096586-44096641)
chr2 (173-228)||(44754352-44754407)
chr2 (173-228)||(44759518-44759573)
chr2 (173-228)||(42723207-42723262)
chr2 (1-56)||(42914687-42914742)
[»] scaffold0166 (2 HSPs)
scaffold0166 (1-228)||(13562-13790)
scaffold0166 (1-228)||(19015-19248)
[»] scaffold0517 (1 HSPs)
scaffold0517 (1-214)||(3608-3832)
[»] scaffold0014 (4 HSPs)
scaffold0014 (1-122)||(31590-31711)
scaffold0014 (7-122)||(26424-26539)
scaffold0014 (173-228)||(26657-26712)
scaffold0014 (173-228)||(31829-31884)
[»] scaffold0055 (2 HSPs)
scaffold0055 (7-122)||(3109-3224)
scaffold0055 (173-228)||(3308-3363)
[»] scaffold0052 (2 HSPs)
scaffold0052 (7-122)||(81311-81426)
scaffold0052 (173-228)||(81172-81227)
[»] scaffold0011 (1 HSPs)
scaffold0011 (4-59)||(1613-1668)
[»] scaffold0132 (2 HSPs)
scaffold0132 (4-58)||(2765-2819)
scaffold0132 (4-58)||(10725-10779)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2234680 - 2234453
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| ||||||||||||||||||||| || | |||||||||||||||||| |||||||||||||||||| | || ||||||||||| ||||||| ||||    
T  2234680 cctaaattgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctttctgtacgattaaaggctgcactgccagaaatcgctc 2234581  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2234580 gagaataacacctcaatatggtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaac 2234481  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  2234480 acaaaccgagggagatgagaaggggaga 2234453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 16539462 - 16539235
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||    
T  16539462 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctc 16539363  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    ||||||||||||||| |||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16539362 gagaataacacctcagtatggtttcgaaaaaccactctaatatgacacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 16539263  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||| ||||||    
T  16539262 acaaaccgagggagatgagaatgggaga 16539235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 16626200 - 16626427
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||    
T  16626200 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctc 16626299  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    ||||||||||||||| |||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16626300 gagaataacacctcagtatggtttcgaaaaaccactctaatatgacacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 16626399  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||| ||||||    
T  16626400 acaaaccgagggagatgagaatgggaga 16626427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 42571990 - 42572217
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||  | || ||||||||||| |||||||  |||    
T  42571990 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtaaaattaaaggctgcactgccagaaatctctc 42572089  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  42572090 gagaataacacctcaatatggtttcgaaaaaccattcaaatatggttcgtagaccactcgagaaaccaaagaaggaggaggaaaagaacggttcgtcaac 42572189  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  42572190 acaaaccgagggagatgagaaggggaga 42572217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 19309661 - 19309434
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  ||||| || || ||||||||||| |||||||  |||    
T  19309661 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtaacattaaaggctgcactgccagaaatctctc 19309562  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    ||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  19309561 gagaataacacttcaatatggtttcgaaaaaccagtcaaatatggttcgtagaccactcgagaaaccaaagaaggaggaggaaaagaacagttcgtcaac 19309462  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  19309461 acaaaccgagggagatgagaaggggaga 19309434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 21081082 - 21080862
Alignment:
Q  8 tgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaata 107  Q
    |||||||||||||||||||| ||   |||||||||||||||||| |||||||||| ||||||| | || ||||||||||| ||||||| |||||||||||    
T  21081082 tgtgcaaggtagactagcaaccgcaccgtctccaggataaaacagcccagattctatctgtacgattaaaggctgcactgccagaaatcgctcgagaata 21080983  T
Q  108 acacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaacc 207  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||    
T  21080982 acacctcaatatggtttcaaaaaaccactctaatatggtacgtagaccacttaagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaacc 21080883  T
Q  208 gagggagatgagaaggggaga 228  Q
    |||| ||||||||||||||||    
T  21080882 gaggaagatgagaaggggaga 21080862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 17495448 - 17495675
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||| ||||||||| ||||||||||| |||||| | || |||| |||||| ||||||| ||||    
T  17495448 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaagataaaacagcccagattcttactgtacgattaaaggcagcactgccagaaatcgctc 17495547  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  17495548 gagaataacacctccatatggtttcaaaaaaccactcttatatggtacgtagaccactcaagaaaccaaagaaggaggaagaaaagaacggttcgtcaac 17495647  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||| ||||    
T  17495648 acaaaccgagggagatgagaaggcgaga 17495675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 17557766 - 17557539
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||| ||||||||| ||||||||||| |||||| | || |||| |||||| ||||||| ||||    
T  17557766 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaagataaaacagcccagattcttactgtacgattaaaggcagcactgccagaaatcgctc 17557667  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  17557666 gagaataacacctccatatggtttcaaaaaaccactcttatatggtacgtagaccactcaagaaaccaaagaaggaggaagaaaagaacggttcgtcaac 17557567  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||| ||||    
T  17557566 acaaaccgagggagatgagaaggcgaga 17557539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32212704 - 32212476
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| ||||||||||||||||||||| || |  ||||||||||||||||| |||||||||||||||||| | || ||| ||||||| ||||||| ||||    
T  32212704 cctaaattgtgcaaggtagactagcaaccgcgctgtctccaggataaaacagcccagattctttctgtacgattaaaggttgcactgccagaaatcgctc 32212605  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaag-aaggaggaagaaaagaactgttcgtcaa 199  Q
    || ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| ||||    
T  32212604 gaaaataacacctcaatatggtttcgaaaaaccactccaatatggtacgaagaccactcgagaaaccaaagaaaggaggaagaaaagaacggttcatcaa 32212505  T
Q  200 cacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||    
T  32212504 cacaaaccgagggagatgagaaggggaga 32212476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 12934446 - 12934669
Alignment:
Q  5 agttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgaga 104  Q
    ||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||  | || ||| ||||||| |||||||  |||||||    
T  12934446 agttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtaagattaaaggttgcactgccagaaatctctcgaga 12934545  T
Q  105 ataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaa 204  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  12934546 ataacacctcaatatggtttcgaaaaaccactcaaatatggttcgtagaccactcgagaaaacaaagaaggaggaagaaaagaacggttcatcaacacaa 12934645  T
Q  205 accgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||    
T  12934646 accgagggagatgagaaggggaga 12934669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 43892903 - 43893141
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    |||||||||||||||||| |||||||| || | |||||||||||||||||| | ||||||||| |||||| | || ||| |||||||  |||||| ||||    
T  43892903 cctaagttgtgcaaggtaaactagcaaccgcgccgtctccaggataaaacagctcagattcttactgtacgattaaaggttgcactgctagaaatcgctc 43893002  T
Q  101 gagaataacacctcaatatggtttcgaaaa----------accattctaatatggtacgtagaccactcgagaaaccaaagaagg-aggaagaaaagaac 189  Q
    ||||||||||||||  ||||||||||||||          |||| |||| ||||| |||||||||||||||||||||||||| || ||||||||||||||    
T  43893003 gagaataacacctcggtatggtttcgaaaagtttcgaaaaaccactctagtatggcacgtagaccactcgagaaaccaaagaggggaggaagaaaagaac 43893102  T
Q  190 tgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
      |||||||||||||||||||||||||||||||||||||    
T  43893103 gattcgtcaacacaaaccgagggagatgagaaggggaga 43893141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 47177169 - 47177040
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | ||||| |||||||||||| | ||||||||| |||||| | || ||||||||||| ||||||| ||||    
T  47177169 cctaagttgtgcaaggtagactagcaaccgcgccgtcttcaggataaaacagctcagattcttactgtacgattaaaggctgcactgccagaaatcgctc 47177070  T
Q  101 gagaataacacctcaatatggtttcgaaaa 130  Q
    ||||||||||||||| ||||||||||||||    
T  47177069 gagaataacacctcagtatggtttcgaaaa 47177040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 33238053 - 33238168
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  33238053 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 33238152  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  33238153 gacacctcgatatggt 33238168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 33243230 - 33243345
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  33243230 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 33243329  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  33243330 gacacctcgatatggt 33243345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 47993851 - 47993966
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  47993851 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 47993950  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  47993951 gacacctcgatatggt 47993966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 47999026 - 47999141
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  47999026 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 47999125  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  47999126 gacacctcgatatggt 47999141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 33238286 - 33238341
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  33238286 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 33238341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 47994084 - 47994139
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  47994084 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 47994139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 47999259 - 47999314
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  47999259 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 47999314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 9973510 - 9973565
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagat 59  Q
    |||||||||||||||||| | ||| |  | ||||||||||||||||||||||||||    
T  9973510 aagttgtgcaaggtagacgaacaaccacgccgtctccaggataaaacaacccagat 9973565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 33243463 - 33243518
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  || ||||||||||| || |||||||||||||||||||    
T  33243463 aggaggaggaaaagaacgatttgtcaacacaaatcgcgggagatgagaaggggaga 33243518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Complemental strand, 47177003 - 47176973
Alignment:
Q  198 aacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||||    
T  47177003 aacacaaaccgagggagatgagaaggggaga 47176973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 24884757 - 24884985
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaa-caacccagattctttctgtaccagtagaggctgcactggcagaaatggct 99  Q
    ||||||||||||||||||||||||||| |  | |||||||||||||||| || |||||||| ||||||||| | || ||||||||||| ||||||| |||    
T  24884757 cctaagttgtgcaaggtagactagcaaccacgccgtctccaggataaaaacagcccagattatttctgtacgattaaaggctgcactgccagaaatcgct 24884856  T
Q  100 cgagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaa 199  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24884857 cgagaataacacctcaatatggtttcgaaaaaccactctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaa 24884956  T
Q  200 cacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||    
T  24884957 cacaaaccgagggagatgagaaggggaga 24884985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 43999280 - 43999053
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| |||||||||||||||||||||  | | |||||||||||||||||| |||||||||| ||||||| | || ||||||||||  || |||| ||||    
T  43999280 cctaaattgtgcaaggtagactagcaactgcgccgtctccaggataaaacagcccagattctatctgtacgattaaaggctgcactaccaaaaatcgctc 43999181  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43999180 gagaataacacctcaatatggtttcgaaaaaccactctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaac 43999081  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  43999080 acaaaccgagggagatgagaaggggaga 43999053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 17955839 - 17955614
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  17955839 cctaaattgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 17955740  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||    
T  17955739 gagaataacacctcaatatggtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacgattcgtcaac 17955640  T
Q  201 acaaaccgagggagatgagaagggga 226  Q
    ||||||||||||||||||||||||||    
T  17955639 acaaaccgagggagatgagaagggga 17955614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 21644131 - 21643904
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | || ||||||||||||||| ||||||||||  |||||| | || |||||||||||  |||||| ||||    
T  21644131 cctaagttgtgcaaggtagactagcaaccgcgccgactccaggataaaacagcccagattctaactgtacgattaaaggctgcactgctagaaatcgctc 21644032  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||| |||||||| |||| |||||    
T  21644031 gagaataacacctcaatatggtttcgaaaagccactataatatggtacgcagaccactcgagaaaccaaagaaggaggaaaaaaagaacggttcatcaac 21643932  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||| ||||||||||    
T  21643931 acaaaccgagggagatgggaaggggaga 21643904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 21643652 - 21643464
Alignment:
Q  37 ctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaataacacctcaatatggtttcgaaaaaccatt 136  Q
    ||||||||||||||| ||||||||||  |||||| | || ||| |||||||    |||| |||||||||||||||||||||||||||||||||| ||| |    
T  21643652 ctccaggataaaacagcccagattctaactgtacgattaaaggttgcactgc---aaatcgctcgagaataacacctcaatatggtttcgaaaagccact 21643556  T
Q  137 ctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  21643555 ctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaatcgagggagatgagaaggggaga 21643464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 42514424 - 42514240
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||| |||   |||||| | || ||||||||||| ||||||| ||||    
T  42514424 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccaggttcaaactgtacgattaaaggctgcactgccagaaatcgctc 42514325  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaa 185  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  42514324 gagaataacacctcaatatggtttcgaaaaaccactctaatatagtacgcagaccactcgagaaaacaaagaaggaggaagaaaa 42514240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 21642806 - 21642714
Alignment:
Q  136 tctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21642806 tctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggaga 21642714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 21643181 - 21643089
Alignment:
Q  136 tctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21643181 tctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggaga 21643089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 21641681 - 21641589
Alignment:
Q  136 tctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  21641681 tctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacataaaccgagggagatgagaaggggaga 21641589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 21642056 - 21641964
Alignment:
Q  136 tctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  21642056 tctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacataaaccgagggagatgagaaggggaga 21641964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 21642431 - 21642339
Alignment:
Q  136 tctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  21642431 tctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacataaaccgagggagatgagaaggggaga 21642339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 32015751 - 32015866
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  32015751 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 32015850  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  32015851 gacacctcgatatggt 32015866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 32010810 - 32010865
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  32010810 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 32010865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 32015984 - 32016039
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  32015984 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 32016039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 33616774 - 33616719
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagat 59  Q
    |||||||||||||||||||| ||| |  | |||||||||||||||||| |||||||    
T  33616774 aagttgtgcaaggtagactaacaaccacgccgtctccaggataaaacagcccagat 33616719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 17357890 - 17358110
Alignment:
Q  8 tgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaata 107  Q
    |||||||||||||||||||| || | |||||||||||||||||| |||||||||| ||||||| | || ||||||||||| ||||||| |||||||||||    
T  17357890 tgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctatctgtacgattaaaggctgcactgccagaaatcgctcgagaata 17357989  T
Q  108 acacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaacc 207  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  17357990 acacctcaatatggtttcgaaaaaccactctaatatggtacgtagaccactcgagaaaccaaagaaggaagaagaaaagaacggttcgtcaacacaaacc 17358089  T
Q  208 gagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||    
T  17358090 gagggagatgagaaggggaga 17358110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 34129219 - 34128992
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| ||||||||||||||||||||| || | |||||||||||||||||| |||||||||| ||||||| | || |||||||||   ||||||| ||||    
T  34129219 cctaaattgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctatctgtacgattaaaggctgcaccaccagaaatcgctc 34129120  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  34129119 gagaataacacctcaatatggtttcgaaaaaccactctaatatggtacgtagaccactcgagaaaccaaagaaggatgaagaaaagaacggttcgtcaac 34129020  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  34129019 acaaaccgagggagatgagaaggggaga 34128992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3476996 - 3476768
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||    
T  3476996 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctc 3476897  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaaga-aggaggaagaaaagaactgttcgtcaa 199  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||||||||||  |||||||||    
T  3476896 gagaataacacctcagtatggtttcgaaaaaccactctaatatggcacgtagaccactcgagaaaccaaagaggggaggaagaaaagaatggttcgtcaa 3476797  T
Q  200 cacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||    
T  3476796 cacaaaccgagggagatgagaaggggaga 3476768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 10321493 - 10321715
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaa-caacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaa 105  Q
    ||||||||||||||||||||| || |  |||||||| |||||| || |||||||||  ||||||| | || ||||||||||| ||||||| |||||||||    
T  10321493 ttgtgcaaggtagactagcaaccgcgttgtctccagaataaaaacagcccagattccatctgtacgattaaaggctgcactgccagaaatcgctcgagaa 10321592  T
Q  106 taacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaa 205  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10321593 taacacctcaatatggtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaa 10321692  T
Q  206 ccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||    
T  10321693 ccgagggagatgagaaggggaga 10321715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 54270689 - 54270917
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | ||||||||||||||||||   |||||||   |||||| | || ||||||||||| ||||||| ||||    
T  54270689 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagttcagattcaaactgtacgattaaaggctgcactgccagaaatcgctc 54270788  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaagga-ggaagaaaagaactgttcgtcaa 199  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||  | |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  54270789 gagaataacacctcaatatggttttgaaaaaccactctaatatggtttgcagaccactcgagaaaccaaagaaggagggaagaaaagaacggttcgtcaa 54270888  T
Q  200 cacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||    
T  54270889 cacaaaccgagggagatgagaaggggaga 54270917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3482473 - 3482235
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||    
T  3482473 cctaatttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctc 3482374  T
Q  101 gagaataacacctcaatatggtttcg----------aaaaaccattctaatatggtacgtagaccactcgagaaaccaaaga-aggaggaagaaaagaac 189  Q
    ||||||||||||||| ||||||||||          |||||||| |||||||||| |||||||||||| ||||| ||||| | |||||||||||||||||    
T  3482373 gagaataacacctcagtatggtttcgaaaagtttcgaaaaaccactctaatatggcacgtagaccacttgagaatccaaatagaggaggaagaaaagaac 3482274  T
Q  190 tgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
     ||||||||||||||||||||||||||||||||||||||    
T  3482273 ggttcgtcaacacaaaccgagggagatgagaaggggaga 3482235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4117650 - 4117414
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || |  ||||||||||||||||| |||||||||   |||||| | || ||||||||||| ||||||| ||||    
T  4117650 cctaagttgtgcaaggtagactagcaaccgcgctgtctccaggataaaacagcccagattcaaactgtacgattaaaggctgcactgccagaaatcgctc 4117551  T
Q  101 gagaataacacctcaatatggtttcgaaaa--------accattctaatatggtacgtagaccactcgagaaaccaaagaaggagg-aagaaaagaactg 191  Q
    ||||||||||||||| ||||||||||||||        |||| | ||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |    
T  4117550 gagaataacacctcagtatggtttcgaaaattcgaaaaaccactgtaatatggttcatagaccactcgagaaaccaaagaaggagggaagaaaagaacgg 4117451  T
Q  192 ttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||||||||||    
T  4117450 ttcgtcaacacaaaccgagggagatgagaaggggaga 4117414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 17368764 - 17368988
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  17368764 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 17368863  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  17368864 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 17368963  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  17368964 ggttcgtcaacacaaaccgcgggag 17368988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 55128835 - 55129059
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||| ||||||||||||||| || | |||||||||||||||||| ||||||||    |||||| | || ||||||||||| ||||||| ||||    
T  55128835 cctaagttgtgtaaggtagactagcaaccgcgccgtctccaggataaaacagcccagatttcaactgtacgattaaaggctgcactgccagaaatcgctc 55128934  T
Q  101 gagaataacacctcaatatggttt-----------cgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    |||||||||||||||| |||||||           |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||  |||||||    
T  55128935 gagaataacacctcaacatggttttcgaaaagtttcgaaaaaccactctaatatggtatgtagaccactcgataaaccaaagaaggaggaaagaaagaac 55129034  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  55129035 ggttcgtcaacacaaaccgcgggag 55129059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 20090706 - 20090591
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  20090706 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 20090607  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  20090606 gacacctcgatatggt 20090591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 20095831 - 20095716
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  20095831 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 20095732  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  20095731 gacacctcgatatggt 20095716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 15763073 - 15762959
Alignment:
Q  8 tgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaata 107  Q
    |||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||     
T  15763073 tgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaatt 15762974  T
Q  108 acacctcaatatggt 122  Q
    ||||||| |||||||    
T  15762973 acacctcgatatggt 15762959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 15768234 - 15768120
Alignment:
Q  8 tgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaata 107  Q
    |||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||     
T  15768234 tgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaatg 15768135  T
Q  108 acacctcaatatggt 122  Q
    ||||||| |||||||    
T  15768134 acacctcgatatggt 15768120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 30341894 - 30341768
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| ||||| ||||||||||||||| ||   | |||||||||||||||| ||||||||||  |||||| | || |||||||||||  |||||| ||||    
T  30341894 cctaaattgtgtaaggtagactagcaaccgcaccatctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgctagaaatcgctc 30341795  T
Q  101 gagaataacacctcaatatggtttcga 127  Q
    |||||||||||||||||||||| ||||    
T  30341794 gagaataacacctcaatatggtctcga 30341768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 17364117 - 17364171
Alignment:
Q  8 tgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattct 62  Q
    |||||||||||||||||||| || | |||||||||||||||||| ||||||||||    
T  17364117 tgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattct 17364171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 15762841 - 15762786
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  15762841 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 15762786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 15768002 - 15767947
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  15768002 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 15767947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 20090473 - 20090418
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  20090473 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 20090418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 20095598 - 20095543
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  20095598 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 20095543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 30338607 - 30338575
Alignment:
Q  196 tcaacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||||||    
T  30338607 tcaacacaaaccgagggagatgagaaggggaga 30338575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 13022075 - 13022130
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagat 59  Q
    |||||||||||||||||||| ||| |  | |||||||||||||||||| |||||||    
T  13022075 aagttgtgcaaggtagactaacaaccacgccgtctccaggataaaacagcccagat 13022130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 26962107 - 26962154
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaaca 51  Q
    |||||||||||||||||||| |||||  | ||||||||||||||||||    
T  26962107 aagttgtgcaaggtagactaacaaacacgccgtctccaggataaaaca 26962154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 37055 - 37282
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| ||||||||||||||||||||| || | |||||||||||||||||| |||||||||||||||||| | || ||||||||||| || |||| ||||    
T  37055 cctaaattgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctttctgtacgattaaaggctgcactgccaaaaatcgctc 37154  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37155 gagaataacacctcaatatggtttcaaaaaaccactctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaac 37254  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||| ||||||||||||||||    
T  37255 acaaaccgaggaagatgagaaggggaga 37282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2818197 - 2817970
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    |||||||||||||||||||||||| || || | |||||||||||||||||| | |||||||||||||||| | || ||| ||||||| ||||||| ||||    
T  2818197 cctaagttgtgcaaggtagactagaaaccgcgccgtctccaggataaaacagctcagattctttctgtacgattaaaggttgcactgccagaaatcgctc 2818098  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  2818097 gagaataacacctcaatatggtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaacaaggaggaagaaaagaacggttcgtcaac 2817998  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  2817997 acaaaccgagggagatgagaaggggaga 2817970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31981605 - 31981835
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattcttt--ctgtaccagtagaggctgcactggcagaaatggc 98  Q
    ||||| ||||||||||||||||||||| || | ||||||||||||||||||  |||||||||    |||||| | || ||||||||||| ||||||| ||    
T  31981605 cctaaattgtgcaaggtagactagcaaccgcgccgtctccaggataaaacaggccagattctaaaactgtacgattaaaggctgcactgccagaaatcgc 31981704  T
Q  99 tcgagaataacacctcaa-tatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtc 197  Q
    |||||||||||||||||| |||||||||||||||||| || |||| |||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  31981705 tcgagaataacacctcaaatatggtttcgaaaaaccactcaaatacggtacgcagaccgctcgagaaaccaaagaaggaggaggaaaagaacggttcgtc 31981804  T
Q  198 aacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||||    
T  31981805 aacacaaaccgagggagatgagaaggggaga 31981835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 34375964 - 34376201
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    |||||||||||||| ||||| |||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||    
T  34375964 cctaagttgtgcaacgtagattagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctc 34376063  T
Q  101 gagaataacacctcaatatggttt----------cgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaact 190  Q
    ||||||||||||||| ||||||||          |||||||||| |||||||||| ||| |||||||||||||||||||||| ||||||||||||||||     
T  34376064 gagaataacacctcagtatggtttcgaaaagtttcgaaaaaccactctaatatggcacgcagaccactcgagaaaccaaagagggaggaagaaaagaacg 34376163  T
Q  191 gttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34376164 gttcgtcaacacaaaccgagggagatgagaaggggaga 34376201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 34142128 - 34142361
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgag 103  Q
    |||||||||||||||||||||||| || | |||||||||||||||||| |||||||||   |||||| | || |||||||||||  |||||| |||||||    
T  34142128 aagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcaaactgtacgattaaaggctgcactgctagaaatcgctcgag 34142227  T
Q  104 aataacacctcaatatggtttcgaaaa--------accattctaatatggtacgtagaccactcgagaaaccaaagaaggagg-aagaaaagaactgttc 194  Q
    |||||||||||| ||||||||||||||        |||| ||||||||||| || |||| ||||||||||||||||||||||| ||||||||||| ||||    
T  34142228 aataacacctcagtatggtttcgaaaattcgaaaaaccactctaatatggttcgcagacaactcgagaaaccaaagaaggagggaagaaaagaacggttc 34142327  T
Q  195 gtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||||||||    
T  34142328 gtcaacacaaaccgagggagatgagaaggggaga 34142361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 34154744 - 34154977
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgag 103  Q
    |||||||||||||||||||||||| || | |||||||||||||||||| |||||||||   |||||| | || |||||||||||  |||||| |||||||    
T  34154744 aagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcaaactgtacgattaaaggctgcactgctagaaatcgctcgag 34154843  T
Q  104 aataacacctcaatatggtttcgaaaa--------accattctaatatggtacgtagaccactcgagaaaccaaagaaggagg-aagaaaagaactgttc 194  Q
    |||||||||||| ||||||||||||||        |||| ||||||||||| || |||| ||||||||||||||||||||||| ||||||||||| ||||    
T  34154844 aataacacctcagtatggtttcgaaaattcgaaaaaccactctaatatggttcgcagacaactcgagaaaccaaagaaggagggaagaaaagaacggttc 34154943  T
Q  195 gtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||||||||    
T  34154944 gtcaacacaaaccgagggagatgagaaggggaga 34154977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 24192526 - 24192292
Alignment:
Q  5 agttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgaga 104  Q
    ||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||  | || ||||||||||| |||||||  |||||||    
T  24192526 agttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtaagattaaaggctgcactgccagaaatctctcgaga 24192427  T
Q  105 ataacacctcaatatggtttcgaaaa----------accattctaatatggtacgtagaccactcgagaaaccaaagaaggagg-aagaaaagaactgtt 193  Q
    ||||||||||| ||||||||||||||          |||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||| |||    
T  24192426 ataacacctcagtatggtttcgaaaagtttcgaaaaaccactctaatatggcacgtagaccactcgagaaaccaaagagggaggaaagaaaaaaacggtt 24192327  T
Q  194 cgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||||||||    
T  24192326 cgtcaacacaaaccgagggagatgagaaggggaga 24192292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 29491287 - 29491062
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  29491287 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 29491188  T
Q  101 gagaataacacctcaatatgg-tttcg-----------aaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaa 188  Q
    ||||||||||||||||||||| |||||           |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  29491187 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaaaaaagaa 29491088  T
Q  189 ctgttcgtcaacacaaaccgagggag 214  Q
    | |||||||||||||||||| |||||    
T  29491087 cggttcgtcaacacaaaccgcgggag 29491062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 21396744 - 21396968
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | | |||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  21396744 cctaagttgtgcaaggtagactagcaaccgcgccatctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 21396843  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  21396844 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 21396943  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  21396944 ggttcgtcaacacaaaccgcgggag 21396968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 24191429 - 24191195
Alignment:
Q  5 agttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgaga 104  Q
    |||||||||||||||||||| || || | |||||||||||||||||| ||||||||||  |||||  | || ||||||||||| |||||||  |||||||    
T  24191429 agttgtgcaaggtagactagtaaccgcgccgtctccaggataaaacagcccagattctaactgtaagattaaaggctgcactgccagaaatctctcgaga 24191330  T
Q  105 ataacacctcaatatggtttcgaaaa----------accattctaatatggtacgtagaccactcgagaaaccaaagaaggagg-aagaaaagaactgtt 193  Q
    ||||||||||| ||||||||||||||          |||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||| |||    
T  24191329 ataacacctcagtatggtttcgaaaagtttcgaaaaaccactctaatatggcacgtagaccactcgagaaaccaaagagggaggaaagaaaaaaacggtt 24191230  T
Q  194 cgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||||||||    
T  24191229 cgtcaacacaaaccgagggagatgagaaggggaga 24191195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 22703416 - 22703192
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| |||||||  |||    
T  22703416 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgtcagaaatcactc 22703317  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           ||||| |||||||| |||||||||||||||||||||||| | ||||||||||||||||||  |||||||    
T  22703316 gagaataacacctcaatatggttttcgaaaagtttcaaaaaaccactctaatatggtacgtagaccactcaataaaccaaagaaggaggaaagaaagaac 22703217  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  22703216 ggttcgtcaacacaaaccgcgggag 22703192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 21401862 - 21402004
Alignment:
Q  77 aggctgcactggcagaaatggctcgagaataacacctcaatatggttt-----------cgaaaaaccattctaatatggtacgtagaccactcgagaaa 165  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||           |||||||||| |||||||||||||||||||||||||| |||    
T  21401862 aggctgcactgccagaaatcgctcgagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaa 21401961  T
Q  166 ccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccg 208  Q
    |||||||||||||||  ||||||| ||||||||||||||||||    
T  21401962 ccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccg 21402004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 6728380 - 6728285
Alignment:
Q  77 aggctgcactggcagaaatggctcgagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaaga 172  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  6728380 aggctgcactgccagaaatcgctcgagaataacacctcagtatggtttcgaaaaaccagtctaatatggcacgtagaccactcgagaaaccaaaga 6728285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 22698287 - 22698172
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  22698287 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 22698188  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  22698187 gacacctcgatatggt 22698172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 22698054 - 22697999
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  22698054 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 22697999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 13605139 - 13605087
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaaccca 56  Q
    |||||||||||||||||||| ||| |  | |||||||||||||||||| ||||    
T  13605139 aagttgtgcaaggtagactaacaaccacgccgtctccaggataaaacagccca 13605087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 53797674 - 53797901
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| ||||||||||||||||||||| || | |||||||||||||||||| |||||||||||||||||| | || |||||||||||  |||||| ||||    
T  53797674 cctaaattgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctttctgtacgattaaaggctgcactgctagaaatcgctc 53797773  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  53797774 gagaataacacctcaatatggtttcgaaaaaccactctaatatggcacgtagaccactcaaaaaaccaaagaaggaggaagaaaagaacagttcgtcaac 53797873  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  53797874 acaaaccgagggagatgagaaggggaga 53797901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 51019423 - 51019196
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || | |||||| || ||||||| ||||    
T  51019423 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacatcccagattctaactgtacgattaaatgctgcattgccagaaatcgctc 51019324  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51019323 gagaataacacttcaatatggtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaac 51019224  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  51019223 acaaaccgagggagatgagaaggggaga 51019196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13710713 - 13710941
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||    
T  13710713 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctc 13710812  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaaga-aggaggaagaaaagaactgttcgtcaa 199  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||||||||||  |||||||||    
T  13710813 gagaataacacctcagtatggtttcgaaaaaccactctaatatggcacgtagaccactcgagaaaccaaagaggggaggaagaaaagaatggttcgtcaa 13710912  T
Q  200 cacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||    
T  13710913 cacaaaccgagggagatgagaaggggaga 13710941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 41393290 - 41393508
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| | ||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  41393290 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcacagattctaactgtacgattaaaggctgcactgccagaaatcgctc 41393389  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41393390 gagaataacacctcaatatggtttcgaaaaaccactctaatatggttcgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaac 41393489  T
Q  201 acaaaccgagggagatgag 219  Q
    ||||||||| |||||||||    
T  41393490 acaaaccgatggagatgag 41393508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 54991531 - 54991745
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  54991531 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 54991630  T
Q  101 gagaataacacctcaatatgg-tttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaa 199  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||  ||||||| |||||||||    
T  54991631 gagaataacacctcaatatggttttcgaaaaaccactctaatatggtacgtaaaccactcgataaaccaaagaaggagaaaagaaagaacggttcgtcaa 54991730  T
Q  200 cacaaaccgagggag 214  Q
    ||||||||| |||||    
T  54991731 cacaaaccgcgggag 54991745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13695204 - 13695434
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattcttt--ctgtaccagtagaggctgcactggcagaaatggc 98  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| || |||||||    |||||| | || ||||||||||| ||||||| ||    
T  13695204 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcctagattctaaaactgtacgattaaaggctgcactgccagaaatcgc 13695303  T
Q  99 tcgagaataacacctcaa-tatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtc 197  Q
    |||||||||||||||||| |||||||||||||||||| || |||| |||||| ||||| ||||||||||||||||||||||| ||||||||  ||| |||    
T  13695304 tcgagaataacacctcaaatatggtttcgaaaaaccactcaaatacggtacgcagaccgctcgagaaaccaaagaaggaggaggaaaagaatggtttgtc 13695403  T
Q  198 aacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||||    
T  13695404 aacacaaaccgagggagatgagaaggggaga 13695434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8980335 - 8980111
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  8980335 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 8980236  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  8980235 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 8980136  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  8980135 ggttcgtcaacacaaaccgcgggag 8980111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8985455 - 8985231
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  8985455 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 8985356  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  8985355 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 8985256  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  8985255 ggttcgtcaacacaaaccgcgggag 8985231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 13700555 - 13700779
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  13700555 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 13700654  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  13700655 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 13700754  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  13700755 ggttcgtcaacacaaaccgcgggag 13700779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 21299883 - 21299659
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  21299883 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 21299784  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  21299783 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 21299684  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  21299683 ggttcgtcaacacaaaccgcgggag 21299659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 21305003 - 21304779
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||| ||||||| ||||||| ||||    
T  21305003 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggttgcactgccagaaatcgctc 21304904  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  21304903 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 21304804  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  21304803 ggttcgtcaacacaaaccgcgggag 21304779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 9764071 - 9763840
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||| ||| ||   |||||| ||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||    
T  9764071 cctaagttgtgcaaggtagactaacaaccgcaccgtctctaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctc 9763972  T
Q  101 gagaataacacctcaatatggtttcg-----------aaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||||||||           |||||||| |||||||       || |||||||||||||||||||||||||||||||||||||    
T  9763971 gagaataacacctcaatatggtttcgaaaagtttcgaaaaaaccactctaata-------tataccactcgagaaaccaaagaaggaggaagaaaagaac 9763879  T
Q  190 tgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
     |||||||||||||||||| |||||||||||||||||||    
T  9763878 ggttcgtcaacacaaaccgcgggagatgagaaggggaga 9763840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 47046357 - 47046129
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| | |||||||   |||||| |          ||||| ||||||| ||||    
T  47046357 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagctcagattcaaactgtacgat---------cactgccagaaatcgctc 47046267  T
Q  101 gagaataacacctcaatatggtttcgaaaa---------accattctaatatggtacgtagaccactcgagaaaccaaagaaggagg-aagaaaagaact 190  Q
    ||||||||||||||| ||||||||||||||         |||| |||||||||| ||| ||||||| |||||||||||||| ||||| |||||||||||     
T  47046266 gagaataacacctcagtatggtttcgaaaagtttcgaaaaccactctaatatggcacgcagaccacccgagaaaccaaagagggagggaagaaaagaacg 47046167  T
Q  191 gttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||| | |||||||||||||||||||||    
T  47046166 gttcgtcaacacaacctgagggagatgagaaggggaga 47046129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 36354227 - 36354343
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  36354227 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 36354326  T
Q  107 aacacctcaatatggtt 123  Q
     ||||||| ||||||||    
T  36354327 gacacctcgatatggtt 36354343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 36359345 - 36359460
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  36359345 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 36359444  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  36359445 gacacctcgatatggt 36359460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 40004078 - 40004193
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  40004078 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 40004177  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  40004178 gacacctcgatatggt 40004193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 54348408 - 54348523
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  54348408 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 54348507  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  54348508 gacacctcgatatggt 54348523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 39999120 - 39999235
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||| ||||| ||||||| ||||||||||    
T  39999120 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctacactgccagaaatcgctcgagaat 39999219  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  39999220 gacacctcgatatggt 39999235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 54343254 - 54343369
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | ||||| |||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  54343254 ttgtgcaaggtagactagcaaccgcgccgtctacaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 54343353  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  54343354 gacacctcgatatggt 54343369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 36354426 - 36354481
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  36354426 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 36354481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 39999353 - 39999408
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  39999353 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 39999408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 40004311 - 40004366
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  40004311 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 40004366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 54343487 - 54343542
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  54343487 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 54343542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 54348641 - 54348696
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  54348641 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 54348696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 54990686 - 54990636
Alignment:
Q  164 aaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgagggag 214  Q
    |||||||||||||||||  ||||||| |||||||||||||||||| |||||    
T  54990686 aaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggag 54990636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 36359612 - 36359667
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  ||||| |||||||| || |||||||||||||||||||    
T  36359612 aggaggaggaaaagaacgattcgttaacacaaatcgcgggagatgagaaggggaga 36359667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 653094 - 653146
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagat 59  Q
    ||||||||||||||||| ||| |  | |||||||||||||||||| |||||||    
T  653094 ttgtgcaaggtagactaacaaccacgccgtctccaggataaaacagcccagat 653146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 3584646 - 3584873
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| ||||||||||||||||||||| || | |||||||||||||||||| |||||||||||||||||| | || ||||||||||  || |||| ||||    
T  3584646 cctaaattgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctttctgtacgattaaaggctgcactaccataaatcgctc 3584745  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3584746 gacaataacacctcaatatggtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaac 3584845  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  3584846 acaaaccgagggagatgagaaggggaga 3584873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 48246733 - 48246506
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| |||||||||||||||||| | || |||||||| || ||||||| ||||    
T  48246733 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctttctgtacgattaaaggctgcattgccagaaatcgctc 48246634  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  48246633 gagaataacacctcaatatggtttcaaaaaaccactcttatatggtacgtagaccactcggtaaaccaaagaaggaggaagaaaagaacggttcgtcaac 48246534  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  48246533 acaaaccgagggagatgagaaggggaga 48246506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5730150 - 5730377
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| ||||||||||||||||||||| ||   |||||||||||||||||| | |||||||| ||||||| | || ||||| ||||| || |||| ||||    
T  5730150 cctaaattgtgcaaggtagactagcaaccgcaccgtctccaggataaaacagcacagattctatctgtacgattaaaggctacactgccaaaaatcgctc 5730249  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  5730250 gagaataacacctcaatatggtttcgaaaaaccactctaatatggtacacagaccactcgagaaaccaaagaaggaggaataaaagaacggttcgtcaac 5730349  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  5730350 acaaaccgagggagatgagaaggggaga 5730377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 11251163 - 11250949
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || || |||||||| ||| ||| ||||    
T  11251163 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaagactgcactgccagtaatcgctc 11251064  T
Q  101 gagaataacacctcaatatgg-tttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaa 199  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||  ||||||| |||||||||    
T  11251063 gagaataacacctcaatatggttttcgaaaaaccactctaatatgatacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaa 11250964  T
Q  200 cacaaaccgagggag 214  Q
    ||||||||| |||||    
T  11250963 cacaaaccgcgggag 11250949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 5725024 - 5725221
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||| ||||||||||||||||||||| || | |||||||||||||||||| | |||||||| ||||||| | || ||||||||||| ||||||| ||||    
T  5725024 cctaaattgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcacagattctatctgtacgattaaaggctgcactgccagaaatcgctc 5725123  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtca 198  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||||||  ||||||||    
T  5725124 gagaataacacctcaatatggtttcgaaaaaccactctaatatggtacgcaggccactcgagaaaccaaagaagaaggaagaaaagaatggttcgtca 5725221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 37404466 - 37404248
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  37404466 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 37404367  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  ||| |||    
T  37404366 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaataac 37404267  T
Q  190 tgttcgtcaacacaaaccg 208  Q
     ||||||||||||||||||    
T  37404266 ggttcgtcaacacaaaccg 37404248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 27716488 - 27716712
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    |||||||||||||||||||||||||||  | | |||||||||||||||||| ||||||||||  |||||| | || || |||||||| ||||||| ||||    
T  27716488 cctaagttgtgcaaggtagactagcaacagcgtcgtctccaggataaaacagcccagattctaactgtacgattaaagactgcactgccagaaatcgctc 27716587  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  27716588 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 27716687  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  27716688 ggttcgtcaacacaaaccgcgggag 27716712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 37409587 - 37409363
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | ||| |||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  37409587 cctaagttgtgcaaggtagactagcaaccgcgccgtttccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 37409488  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||  ||| |||    
T  37409487 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacatagaccactcgataaaccaaagaaggaggaaagaaaaaac 37409388  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  37409387 ggttcgtcaacacaaaccgcgggag 37409363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 36 - 214
Target Start/End: Original strand, 27711403 - 27711592
Alignment:
Q  36 tctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaataacacctcaatatggttt----------- 124  Q
    |||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||||||||||||||||||||||||||               
T  27711403 tctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctcgagaataacacctcaatatggttttcgaaaagttt 27711502  T
Q  125 cgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgagggag 214  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||| |||||    
T  27711503 cgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggag 27711592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 11387826 - 11387671
Alignment:
Q  36 tctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaataacacctcaatatg-----------gttt 124  Q
    |||||||||||||||| ||||||||||  |||||| | || ||||||||||||||||||| ||||||||||||||||||||||||           ||||    
T  11387826 tctccaggataaaacagcccagattctaactgtacgattaaaggctgcactggcagaaatcgctcgagaataacacctcaatatggttttcgaaaagttt 11387727  T
Q  125 cgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaa 180  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  11387726 cgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaa 11387671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 36684759 - 36684644
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  36684759 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 36684660  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  36684659 gacacctcgatatggt 36684644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 34318268 - 34318160
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| |||| |||||| |||||| | || ||||||||||| ||||||| |||||| |||    
T  34318268 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccaaattcttactgtacgattaaaggctgcactgccagaaatcgctcgaaaat 34318169  T
Q  107 aacacctca 115  Q
     ||||||||    
T  34318168 gacacctca 34318160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 10106151 - 10106206
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagat 59  Q
    |||||||||||||||||||| ||| |  | ||||||||||||||||||||||||||    
T  10106151 aagttgtgcaaggtagactaacaaccacgccgtctccaggataaaacaacccagat 10106206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 36684526 - 36684471
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  36684526 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 36684471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 39747212 - 39747157
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagat 59  Q
    |||||||||||||||||||||||| |  | |||||||||||||||||| |||||||    
T  39747212 aagttgtgcaaggtagactagcaaccacgtcgtctccaggataaaacagcccagat 39747157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 34318096 - 34318045
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggg 224  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||    
T  34318096 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggg 34318045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 25188316 - 25188270
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaac 53  Q
    ||||||||||||||||| ||| |||| |||||||| |||||||||||    
T  25188316 ttgtgcaaggtagactaacaaccgtgtcgtctccaagataaaacaac 25188270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 26651213 - 26651160
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccag 57  Q
    |||||||||||||||||||| ||| |  | |||||||||||||||||| |||||    
T  26651213 aagttgtgcaaggtagactaacaaccacgccgtctccaggataaaacagcccag 26651160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 9258 - 9031
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    |||||||||||||||| |||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  9258 cctaagttgtgcaaggaagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaattgctc 9159  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||    
T  9158 gagaataacacctcaatatggtttcgaaaaaccactctaatatggtacgcaaaccactcgagaaaccaaacaaggaggaagaaaagaacagttcgtcaac 9059  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  9058 acaaaccgagggagatgagaaggggaga 9031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 1414101 - 1413875
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||| ||||||||||| ||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  1414101 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaagataaaacaactcagattctaactgtacgattaaaggctgcactgccagaaatcgctc 1414002  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1414001 gagaataacacctcaatatggtttcgaaaaaccactctaatatggta-gcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaac 1413903  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  1413902 acaaaccgagggagatgagaaggggaga 1413875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 26709156 - 26709375
Alignment:
Q  8 tgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaata 107  Q
    |||||||||||||||||||| || | | |||||||||||||||| |||||||||| ||||||| | || ||||||||||| ||| ||| |||||||||||    
T  26709156 tgtgcaaggtagactagcaaccgcgtcatctccaggataaaacagcccagattctatctgtacgattaaaggctgcactgccagtaatcgctcgagaata 26709255  T
Q  108 acacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaacc 207  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||    
T  26709256 acacctcaatatggtttcgaaaaaccactctaatatggtac-cagaccactcgagaaaccaaagaaggaggaagaaaagaatggttcatcaacacaaacc 26709354  T
Q  208 gagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||    
T  26709355 gagggagatgagaaggggaga 26709375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 26978890 - 26979109
Alignment:
Q  8 tgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaata 107  Q
    |||||||||||||||||||| || | | |||||||||||||||| |||||||||| ||||||| | || ||||||||||| ||| ||| |||||||||||    
T  26978890 tgtgcaaggtagactagcaaccgcgtcatctccaggataaaacagcccagattctatctgtacgattaaaggctgcactgccagtaatcgctcgagaata 26978989  T
Q  108 acacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaacc 207  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||    
T  26978990 acacctcaatatggtttcgaaaaaccactctaatatggtac-cagaccactcgagaaaccaaagaaggaggaagaaaagaatggttcatcaacacaaacc 26979088  T
Q  208 gagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||    
T  26979089 gagggagatgagaaggggaga 26979109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 36253871 - 36254108
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | || ||||||||||||||| ||||||||||  |||||| | || |||||||||||  |||||| ||||    
T  36253871 cctaagttgtgcaaggtagactagcaaccgcgccgcctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgctagaaatcgctc 36253970  T
Q  101 gagaataacacctcaatatggttt----------cgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaact 190  Q
    ||||||||||||||||||||||||          |||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||     
T  36253971 gagaataacacctcaatatggtttcgaaaagtttcgaaaaaccactctaatatggtacgcaaaccactcgagaaaccaaagaaggaggaagaaaagaacg 36254070  T
Q  191 gttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  36254071 gttcgtcaacacaaactgagggagatgagaaagggaga 36254108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 24776865 - 24776632
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacg---tctccaggataaaacaacccagattcttt--ctgtaccagtagaggctgcactggcagaaat 95  Q
    ||||||||||||||||||||||||||| || | ||   |||||||||||||||| ||||||||||    |||||| | || ||| | ||||| |||||||    
T  24776865 cctaagttgtgcaaggtagactagcaaccgcggcgccgtctccaggataaaacagcccagattctaaaactgtacgattaaaggattcactgccagaaat 24776766  T
Q  96 ggctcgagaataacacctcaa-tatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttc 194  Q
     |||||||||||||||||||| |||||||||||||||||| || |||| |||||| ||||| ||||||||||||||||||||||| ||||||||| ||||    
T  24776765 cgctcgagaataacacctcaaatatggtttcgaaaaaccactcaaatacggtacgcagaccgctcgagaaaccaaagaaggaggaggaaaagaacggttc 24776666  T
Q  195 gtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||||||||    
T  24776665 gtcaacacaaaccgagggagatgagaaggggaga 24776632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 24771407 - 24771177
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattcttt--ctgtaccagtagaggctgcactggcagaaatggc 98  Q
    ||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||||||    |||||| | || ||||| |||||  |||||| ||    
T  24771407 cctaagttgtgcaaggtagactaacaaccgcgccgtctccaggataaaacaacccagattctaaaactgtacgattaaaggctacactgctagaaatcgc 24771308  T
Q  99 tcgagaataacacctcaa-tatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtc 197  Q
    |||||||||||||||||| || ||||||||||||||| || |||| |||| | ||| | ||||||||||||||||||||||| ||||||||| |||||||    
T  24771307 tcgagaataacacctcaaatacggtttcgaaaaaccactcaaatacggtatgcagatcgctcgagaaaccaaagaaggaggaggaaaagaacggttcgtc 24771208  T
Q  198 aacacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||||    
T  24771207 aacacaaaccgagggagatgagaaggggaga 24771177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 17510103 - 17510327
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  17510103 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 17510202  T
Q  101 gagaataacacctcaatatgg-----------tttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    |||||||||||||||||||||           ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  17510203 gagaataacacctcaatatggttttcaaaaaatttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 17510302  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  17510303 ggttcgtcaacacaaaccgcgggag 17510327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 17504998 - 17505222
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| |||||||  |||    
T  17504998 cctaagttgtgcaaggtagactagcaaccgcgtcgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatccctc 17505097  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  17505098 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 17505197  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  17505198 ggttcgtcaacacaaaccgcgggag 17505222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 42019618 - 42019842
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  42019618 cctaagttgtgcaaggtagactagcaaccgtgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 42019717  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||  ||||||     
T  42019718 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtaaaccactcgataaaccaaagaaggaggaaagaaagaat 42019817  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  42019818 ggttcgtcaacacaaaccgcgggag 42019842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 41858638 - 41858856
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  41858638 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 41858737  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           ||||| |||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||  |||||||    
T  41858738 gagaataacacctcaatatggttttcgaaaagtttcaaaaaaccactctaatatggtatgtagaccactcgataaaccaaagaatgaggaaagaaagaac 41858837  T
Q  190 tgttcgtcaacacaaaccg 208  Q
     ||||||||||||||||||    
T  41858838 ggttcgtcaacacaaaccg 41858856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 41853593 - 41853817
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    |||||||||||||| |||||||||||| || | |||||| | ||||||||| ||||||||||  |||||| | || ||||| ||||| ||||||| ||||    
T  41853593 cctaagttgtgcaaagtagactagcaaccgcgccgtctctacgataaaacagcccagattctaactgtacgattaaaggctacactgccagaaatcgctc 41853692  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  41853693 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 41853792  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||| || |||||||| |||||    
T  41853793 ggttcgttaaaacaaaccgcgggag 41853817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 214
Target Start/End: Original strand, 43579738 - 43579929
Alignment:
Q  34 cgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaataacacctcaatatggttt--------- 124  Q
    |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||||||||||||||||||||| ||||             
T  43579738 cgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctcgagaataacacctcaatatagttttcgaaaagt 43579837  T
Q  125 --cgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgagggag 214  Q
      |||||||||| |||||||||||||||||||||||| | ||||||||||||||||||  ||||||| |||||||||||||||||| |||||    
T  43579838 ttcgaaaaaccactctaatatggtacgtagaccactcaataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggag 43579929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 42024566 - 42024622
Alignment:
Q  158 tcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgagggag 214  Q
    |||| ||||||||||||||||||  |||||||  ||||||||||||||||| |||||    
T  42024566 tcgaaaaaccaaagaaggaggaaagaaagaacgattcgtcaacacaaaccgcgggag 42024622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 7805119 - 7805174
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagat 59  Q
    |||||||||||||||||||| ||| |  | |||||||||||||||||| |||||||    
T  7805119 aagttgtgcaaggtagactaacaaccacgccgtctccaggataaaacagcccagat 7805174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 24435916 - 24435861
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagat 59  Q
    |||||||||||||||||||| ||| |  | |||||||||||||||||| |||||||    
T  24435916 aagttgtgcaaggtagactatcaaccacgccgtctccaggataaaacagcccagat 24435861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 13582734 - 13582682
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagat 59  Q
    ||||||||||||||||| ||| |  | |||||||||||||||||| |||||||    
T  13582734 ttgtgcaaggtagactaacaaccacgccgtctccaggataaaacagcccagat 13582682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 28751779 - 28751552
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||| ||||| ||   |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  28751779 cctaagttgtgcaaggtagacaagcaaccgcaccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 28751680  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaac 200  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28751679 gagaataacacctcaatatggttttgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaac 28751580  T
Q  201 acaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||    
T  28751579 acaaaccgagggagatgagaaggggaga 28751552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 4163525 - 4163400
Alignment:
Q  103 gaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacac 202  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4163525 gaataacacctcaatatggtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacac 4163426  T
Q  203 aaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||    
T  4163425 aaaccgagggagatgagaaggggaga 4163400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 40392364 - 40392588
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| |  | |||||||||||||||||| |||| |||||  |||||| | || ||||||||||| ||||||| ||||    
T  40392364 cctaagttgtgcaaggtagactagcaaccacgccgtctccaggataaaacagcccaaattctaactgtacgattaaaggctgcactgccagaaatcgctc 40392463  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  40392464 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 40392563  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  40392564 ggttcgtcaacacaaaccgcgggag 40392588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 40518514 - 40518304
Alignment:
Q  9 gtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaataa 108  Q
    ||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| || |||| ||||||||||||    
T  40518514 gtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccaaaaatcgctcgagaataa 40518415  T
Q  109 cacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaacc-aaagaaggaggaagaaaagaactgttcgt 196  Q
    ||||||||||||           |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  40518414 cacctcaatatggttttcaaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaaagaaggaggaag-aaagaacggttcgt 40518316  T
Q  197 caacacaaaccg 208  Q
    ||||||||||||    
T  40518315 caacacaaaccg 40518304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 42723495 - 42723380
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  42723495 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 42723396  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  42723395 gacacctcgatatggt 42723380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 42728664 - 42728549
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  42728664 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 42728565  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  42728564 gacacctcgatatggt 42728549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 44096353 - 44096468
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  44096353 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 44096452  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  44096453 gacacctcgatatggt 44096468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 44754640 - 44754525
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  44754640 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 44754541  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  44754540 gacacctcgatatggt 44754525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 44759806 - 44759691
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  44759806 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 44759707  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  44759706 gacacctcgatatggt 44759691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 42728431 - 42728376
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  42728431 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 42728376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 44096586 - 44096641
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  44096586 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 44096641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 44754407 - 44754352
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  44754407 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 44754352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 44759573 - 44759518
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  44759573 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 44759518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 42723262 - 42723207
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||   ||||||||||||| || |||||||||||||||||||    
T  42723262 aggaggaggaaaagaacgactcgtcaacacaaatcgcgggagatgagaaggggaga 42723207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42914687 - 42914742
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaaccca 56  Q
    ||||||||||||||||||||||| ||| |  | |||||||||||||||||| ||||    
T  42914687 cctaagttgtgcaaggtagactaacaaccacgccgtctccaggataaaacagccca 42914742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 13790 - 13562
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||    
T  13790 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctc 13691  T
Q  101 gagaataacacctcaatatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaaga-aggaggaagaaaagaactgttcgtcaa 199  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||||||||||  |||||||||    
T  13690 gagaataacacctcagtatggtttcgaaaaaccactctaatatggcacgtagaccactcgagaaaccaaagaggggaggaagaaaagaatggttcgtcaa 13591  T
Q  200 cacaaaccgagggagatgagaaggggaga 228  Q
    |||||||||||||||||||||||||||||    
T  13590 cacaaaccgagggagatgagaaggggaga 13562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 19248 - 19015
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacg---tctccaggataaaacaacccagattcttt--ctgtaccagtagaggctgcactggcagaaat 95  Q
    ||||||||||||||||||||||||||| || | ||   |||||||||||||||| ||||||||||    |||||| | || ||| | ||||| |||||||    
T  19248 cctaagttgtgcaaggtagactagcaaccgcggcgccgtctccaggataaaacagcccagattctaaaactgtacgattaaaggtttcactgccagaaat 19149  T
Q  96 ggctcgagaataacacctcaa-tatggtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttc 194  Q
     |||||||||||||||||||| |||||||||||||||||| || |||| |||||| ||||| ||||||||||||||||||||||| ||||||||| ||||    
T  19148 cgctcgagaataacacctcaaatatggtttcgaaaaaccactcaaatacggtacgcagaccgctcgagaaaccaaagaaggaggaggaaaagaacggttc 19049  T
Q  195 gtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||||||||||||||||||||||||||||||    
T  19048 gtcaacacaaaccgagggagatgagaaggggaga 19015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3608 - 3832
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | ||| |||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  3608 cctaagttgtgcaaggtagactagcaaccgcgccgtttccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 3707  T
Q  101 gagaataacacctcaatatg-----------gtttcgaaaaaccattctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaac 189  Q
    ||||||||||||||||||||           |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||  ||| |||    
T  3708 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacatagaccactcgataaaccaaagaaggaggaaagaaaaaac 3807  T
Q  190 tgttcgtcaacacaaaccgagggag 214  Q
     |||||||||||||||||| |||||    
T  3808 ggttcgtcaacacaaaccgcgggag 3832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31590 - 31711
Alignment:
Q  1 cctaagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctc 100  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||  |||||| | || ||||||||||| ||||||| ||||    
T  31590 cctaagttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattctaactgtacgattaaaggctgcactgccagaaatcgctc 31689  T
Q  101 gagaataacacctcaatatggt 122  Q
    |||||| ||||||| |||||||    
T  31690 gagaatgacacctcgatatggt 31711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 26424 - 26539
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| |||| |||||| |||||| | || ||||||||||| |||||||  |||||||||    
T  26424 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccatattcttactgtacgattaaaggctgcactgccagaaatctctcgagaat 26523  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  26524 gacacctcgatatggt 26539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 26657 - 26712
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  26657 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 26712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 31829 - 31884
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  31829 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 31884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 3109 - 3224
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  3109 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 3208  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  3209 gacacctcgatatggt 3224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 3308 - 3363
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  3308 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 3363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 81426 - 81311
Alignment:
Q  7 ttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagattctttctgtaccagtagaggctgcactggcagaaatggctcgagaat 106  Q
    ||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| |||||| | || ||||||||||| ||||||| ||||||||||    
T  81426 ttgtgcaaggtagactagcaaccgcgccgtctccaggataaaacagcccagattcttactgtacgattaaaggctgcactgccagaaatcgctcgagaat 81327  T
Q  107 aacacctcaatatggt 122  Q
     ||||||| |||||||    
T  81326 gacacctcgatatggt 81311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 81227 - 81172
Alignment:
Q  173 aggaggaagaaaagaactgttcgtcaacacaaaccgagggagatgagaaggggaga 228  Q
    ||||||| |||||||||  |||||||||||||| || |||||||||||||||||||    
T  81227 aggaggaggaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggaga 81172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 1613 - 1668
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccagat 59  Q
    |||||||||||||||||||| ||| |  | |||||||||||||||||| |||||||    
T  1613 aagttgtgcaaggtagactaacaaccacgccgtctccaggataaaacagcccagat 1668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 2819 - 2765
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccaga 58  Q
    |||||||||||||||||||| ||| |  | |||||||||||||||||| ||||||    
T  2819 aagttgtgcaaggtagactaacaaccacgccgtctccaggataaaacagcccaga 2765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 10779 - 10725
Alignment:
Q  4 aagttgtgcaaggtagactagcaaacgtgacgtctccaggataaaacaacccaga 58  Q
    |||||||||||||||||||| ||| |  | |||||||||||||||||| ||||||    
T  10779 aagttgtgcaaggtagactaacaaccacgccgtctccaggataaaacagcccaga 10725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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