View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14551_high_5 (Length: 216)
Name: NF14551_high_5
Description: NF14551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14551_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 1622299 - 1622415
Alignment:
| Q |
85 |
atatatctatgtgaaacaagatagtaacttatatataacttatcaaaaccaaaacgttaaagaattgaaatgatgaaggaacaattttgaactgaaatga |
184 |
Q |
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| T |
1622299 |
atatatctatgtgaaacaagatagtaacttatatataacttatcaaaaccaaaacgctaaagaattgaaatgatggaggaacaattttgaactgaaatga |
1622398 |
T |
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| Q |
185 |
gaatgttgtagcctatg |
201 |
Q |
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| T |
1622399 |
gaatgttgtagcctatg |
1622415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 1617262 - 1617334
Alignment:
| Q |
19 |
atgtatacataattataccgatgtttgagtgttacaactta-ccccctagccgctggatgtggatacatatat |
90 |
Q |
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| T |
1617262 |
atgtatacataattataccgatgtttgagtgttacaacttacccccctacccgctggatgtggatacatatat |
1617334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 40049403 - 40049255
Alignment:
| Q |
53 |
caacttacc-ccctagccgctggatgtggatacatatatctatgtgaaacaagatagtaacttatatataacttatcaaaaccaaaacgttaaagaattg |
151 |
Q |
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| T |
40049403 |
caacttaccgccctagccgctggatgtggatacatat--ctatgtgacacaagattgtaacttata----acttagcaaaaccaatacgttacagaattg |
40049310 |
T |
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| Q |
152 |
aaatga-----tgaaggaacaattttgaactgaaatgagaatgttgtagcctatg |
201 |
Q |
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| T |
40049309 |
aaatgaaatgatgaaggaacaattttgaactgaaacgaaaaggttgtagcctatg |
40049255 |
T |
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