View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14551_high_6 (Length: 202)

Name: NF14551_high_6
Description: NF14551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14551_high_6
NF14551_high_6
[»] chr4 (2 HSPs)
chr4 (115-175)||(4604525-4604585)
chr4 (118-170)||(4626839-4626890)
[»] chr5 (1 HSPs)
chr5 (1-60)||(36915788-36915847)
[»] chr2 (1 HSPs)
chr2 (119-180)||(18793654-18793714)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 4604585 - 4604525
Alignment:
Q  115 caggtcttaaaaagaatacttgaaagaccagaaatttagagaaacggaaagtaatattgat 175  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4604585 caggtcttaaaaagaatgcttgaaagaccagaaatttagagaaacggaaagtaatattgat 4604525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 4626890 - 4626839
Alignment:
Q  118 gtcttaaaaagaatacttgaaagaccagaaatttagagaaacggaaagtaata 170  Q
    |||||||||| ||| |||||||| ||| |||||||||||||| ||||||||||    
T  4626890 gtcttaaaaa-aatgcttgaaagtccataaatttagagaaacagaaagtaata 4626839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36915847 - 36915788
Alignment:
Q  1 atatatatgcccaagaaatcatagccgaatggacacatccacaagcccaaagatcataat 60  Q
    |||||||||||| ||||||||||| || |||| |||||| ||||||||||  ||||||||    
T  36915847 atatatatgccctagaaatcatagacgcatggccacatcaacaagcccaataatcataat 36915788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 18793654 - 18793714
Alignment:
Q  119 tcttaaaaagaatacttgaaagaccagaaatttagagaaacggaaagtaatattgattatgt 180  Q
    ||||||||| ||| |||||||||||||||||||| || ||  ||||||||| ||||||||||    
T  18793654 tcttaaaaa-aatgcttgaaagaccagaaatttaaagcaagagaaagtaattttgattatgt 18793714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University