View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14551_low_7 (Length: 202)
Name: NF14551_low_7
Description: NF14551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14551_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 4604585 - 4604525
Alignment:
| Q |
115 |
caggtcttaaaaagaatacttgaaagaccagaaatttagagaaacggaaagtaatattgat |
175 |
Q |
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| T |
4604585 |
caggtcttaaaaagaatgcttgaaagaccagaaatttagagaaacggaaagtaatattgat |
4604525 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 4626890 - 4626839
Alignment:
| Q |
118 |
gtcttaaaaagaatacttgaaagaccagaaatttagagaaacggaaagtaata |
170 |
Q |
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| T |
4626890 |
gtcttaaaaa-aatgcttgaaagtccataaatttagagaaacagaaagtaata |
4626839 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36915847 - 36915788
Alignment:
| Q |
1 |
atatatatgcccaagaaatcatagccgaatggacacatccacaagcccaaagatcataat |
60 |
Q |
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| T |
36915847 |
atatatatgccctagaaatcatagacgcatggccacatcaacaagcccaataatcataat |
36915788 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 18793654 - 18793714
Alignment:
| Q |
119 |
tcttaaaaagaatacttgaaagaccagaaatttagagaaacggaaagtaatattgattatgt |
180 |
Q |
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| T |
18793654 |
tcttaaaaa-aatgcttgaaagaccagaaatttaaagcaagagaaagtaattttgattatgt |
18793714 |
T |
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