View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14552_high_1 (Length: 408)
Name: NF14552_high_1
Description: NF14552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14552_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 11180821 - 11181227
Alignment:
| Q |
17 |
acattactgaactgaagtgtttggtccaatcaagttacacgagtgagtgaa---------gtacaaatggtggttgagttgagagaataaaaatcaaaat |
107 |
Q |
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| T |
11180821 |
acattactgaactgaagtgtttggtccaatcaagttacacgagtgagtgaactcagtgaagtacaaatggtggttgagttgagagaataaaaatcaaaat |
11180920 |
T |
|
| Q |
108 |
tggaattgaaacaagatttccaacaatgttgtcaaaggaacagctatttgtagtatagactagaaaggcaccctcggnnnnnnnggtgtttctgtatct- |
206 |
Q |
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| T |
11180921 |
tggaattgaaacaagatttccaacaatgttgtcaaaggaacagctatttgtagtatagactagaaaggcaccctcggtttttttggtgtttctgtatcta |
11181020 |
T |
|
| Q |
207 |
---------------atcacctgcatctgcatgcactattgtgttctgtttttactattgttttgtttgaatgccctggacctgtcctgtcccaaacaaa |
291 |
Q |
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| T |
11181021 |
tcacctgcgtgatctatcacctgcatctgcatgcactattgtgttctgtttttactattgctttgtttgaatgccctggacctgtcctgtcccaaacaaa |
11181120 |
T |
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| Q |
292 |
ccccgcaggtgaaattctctatagttttcttgttccgcatgtcactcctagtgttactttttctaccgtctattttgaacatgtataaacccgtgacact |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11181121 |
ccccgcaggtgaaattctctatagttttcttgttccgcatgtcactcctagtgttactttttctactgtctattttgaacatgtataaacccgtgacact |
11181220 |
T |
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| Q |
392 |
acctatg |
398 |
Q |
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| T |
11181221 |
acctatg |
11181227 |
T |
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