View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14552_high_2 (Length: 369)
Name: NF14552_high_2
Description: NF14552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14552_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 35868762 - 35868468
Alignment:
| Q |
15 |
cataggtaactaaatttctcatggttaattatattgttatacacttgtcatttattttcagttttccattatgtttaacatttgttgtcttcttaaaatt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35868762 |
cataggtaactaaatttctcatggttaattatattgttatacacttgtcatttattttcagttttccattatgttta-catttgttgtcttcttaaaatt |
35868664 |
T |
|
| Q |
115 |
gagcccggacaggctgacaccattgcagttttcttcatacatcagtattgtacagagaagaatacatatcctaattggtgatcaataaaaacaaacaaag |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35868663 |
gagccctgacaggctgacaccattgcagttttcttcatacatcagtattgtacagagaagaatacatatcctaattggtgatcaataaaaacaaacaaag |
35868564 |
T |
|
| Q |
215 |
cttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataaactagtgttgagtgctgttgttcttgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35868563 |
cttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataaactagtgttgagtgctgttgttcttgc |
35868468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 353
Target Start/End: Complemental strand, 35868451 - 35868420
Alignment:
| Q |
322 |
tttcttatttgattataattttatacacatac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
35868451 |
tttcttatttgattataattttatacacatac |
35868420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 24442963 - 24442669
Alignment:
| Q |
15 |
cataggtaactaaatttctcatggttaattatattgttatacacttgtcatttattttcagttttccattatgtttaacatttgttgtcttcttaaaatt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24442963 |
cataggtaactaaatttctcatggttaattatattgttatacacttgtcatttattttcagttttccattatgttta-catttgttgtcttcttaaaatt |
24442865 |
T |
|
| Q |
115 |
gagcccggacaggctgacaccattgcagttttcttcatacatcagtattgtacagagaagaatacatatcctaattggtgatcaataaaaacaaacaaag |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24442864 |
gagccctgacaggctgacaccattgcagttttcttcatacatcagtattgtacagagaagaatacatatcctaattggtgatcaataaaaacaaacaaag |
24442765 |
T |
|
| Q |
215 |
cttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataaactagtgttgagtgctgttgttcttgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24442764 |
cttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataaactagtgttgagtgctgttgttcttgc |
24442669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University