View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14552_low_1 (Length: 578)
Name: NF14552_low_1
Description: NF14552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14552_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 6 - 567
Target Start/End: Complemental strand, 33791189 - 33790638
Alignment:
| Q |
6 |
agatggacatcatcaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaactgaatctcttgttgcta |
105 |
Q |
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| T |
33791189 |
agatgtacatcattaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaacagaatctcttgttgcta |
33791090 |
T |
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| Q |
106 |
atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgaggttatatcctcttacagtaaggtttgc |
205 |
Q |
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| T |
33791089 |
atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgaggttatatcctcttacagtaaggtttgc |
33790990 |
T |
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| Q |
206 |
tcttgctgctttctctgattcattgcccttctttgagtctattaatatggatgcgtcacacccctgaaattaaatcaaccaaattggtcatgacaaaata |
305 |
Q |
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| T |
33790989 |
tcttgctgctttctctgattcattgcccttctttgagtctattaatatggatgcgtcacacccctgaaattaaatcaaccaaattggtcatgacaaaata |
33790890 |
T |
|
| Q |
306 |
ttttatattttggtaagtatatgtgtagagtaagataaatatgcagcttcctaaaaattatgatgaatatgcaattgatgtggtcaccattattcattgt |
405 |
Q |
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| T |
33790889 |
ttgtatattttggtaagtatatgtgtagagtaagataaatatgcagctgcctaaa----------aatatgcaattgatgtggtcaccattattcattgt |
33790800 |
T |
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| Q |
406 |
gaaataaaagaccgaacgagttatacnnnnnnnaaggaatgaagtcattnnnnnnnttatatgacaagaacaattaaaaatggaccaaatatatatttat |
505 |
Q |
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| T |
33790799 |
gaaataaaagaccgaacgagttatactttttttaaggaatgaagtcattaaaaaaattatatgacaagaacaattaaaaatggaccaaatatatatttat |
33790700 |
T |
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| Q |
506 |
ctaagagcaatgttattatttaggaagaatactgtccgcgaaatggaagaatataaatgtga |
567 |
Q |
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| T |
33790699 |
ctaagagcaatgttattatttaggaagaatactgtccgcgaaatggaagaatataaatgtga |
33790638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 33764098 - 33764212
Alignment:
| Q |
32 |
taatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaactgaatctcttgttgctaatgatattatgtctgcacatgaaact |
131 |
Q |
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| T |
33764098 |
taatccgtcacgtcttcctgtaggaatattgtattttggtcctccagataaggccacagcatctcttgtagcaagtgctacgatgtctgcacatgaaacc |
33764197 |
T |
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| Q |
132 |
gttgatggacatgca |
146 |
Q |
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| T |
33764198 |
gttgatggacatgca |
33764212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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