View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14552_low_10 (Length: 236)

Name: NF14552_low_10
Description: NF14552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14552_low_10
NF14552_low_10
[»] chr4 (3 HSPs)
chr4 (1-222)||(34722654-34722875)
chr4 (1-222)||(19614053-19614275)
chr4 (139-222)||(44722150-44722233)
[»] chr5 (1 HSPs)
chr5 (1-222)||(30671382-30671604)
[»] chr1 (2 HSPs)
chr1 (1-222)||(22060803-22061023)
chr1 (140-222)||(25344616-25344698)
[»] chr8 (2 HSPs)
chr8 (1-222)||(11662260-11662482)
chr8 (140-222)||(24946748-24946830)
[»] chr3 (1 HSPs)
chr3 (141-222)||(18347865-18347946)
[»] chr7 (2 HSPs)
chr7 (139-222)||(43304754-43304837)
chr7 (140-219)||(40354404-40354483)
[»] chr6 (1 HSPs)
chr6 (144-222)||(12867234-12867312)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34722875 - 34722654
Alignment:
Q  1 caaactctacagggacgcatcccttccttataatgcaaaaaatataagctaccagtagcattcaaaattataagaaacccaaattacagtatcaatagcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34722875 caaactctacagggacgcatcccttccttataatgcaaaaaatataagctaccagtagcattcaaaattataagaaacccaaattacagtatcaatagcg 34722776  T
Q  101 ccatttgatcatggatttcacaaattggaccnnnnnnncccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtagt 200  Q
    || ||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34722775 ccctttgatcatggatttcacaaattagaccaaaaaaacccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtagt 34722676  T
Q  201 agtgagtatacacaaaaatgtt 222  Q
    ||||||||| ||||||||||||    
T  34722675 agtgagtatgcacaaaaatgtt 34722654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19614275 - 19614053
Alignment:
Q  1 caaactctacagggacgcatcccttccttataatgcaaaaaatataagctaccagtagcattcaaaattat--aagaaacccaaattacagtatcaatag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  19614275 caaactctacagggacgcatcccttccttataatgcaaaaaatataagctaccagtagcattcaaaattataaaaaaaacccaaattacagtatcaatag 19614176  T
Q  99 cgccatttgatcatggatttcacaaattggaccnnnnnnncccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagta 198  Q
    |||| |||||| |||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  19614175 cgccctttgattatggatttcacaaattggacc-aaaaaacccattctttctaatctatctgattcagctattgaagagaaggaaaatactatcaaagta 19614077  T
Q  199 gtagtgagtatacacaaaaatgtt 222  Q
    |||||||||||||| |||||||||    
T  19614076 gtagtgagtatacaaaaaaatgtt 19614053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 44722150 - 44722233
Alignment:
Q  139 cccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtagtagtgagtatacacaaaaatgtt 222  Q
    |||||||||||||||| |  | ||||| | ||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  44722150 cccattctttctaatctaattcattcaacaattgaagagaaggaaaagagtatcagagtagcagtgagtatacacgaaaatgtt 44722233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30671604 - 30671382
Alignment:
Q  1 caaactctacagggacgcatcccttccttataatgcaaaaaatataagctaccagtagcattcaaaattataagaaacccaaattacagtatcaatagcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30671604 caaactctacagggacgcatcccttccttataatgcaaaaaatataagctaccagtagcattcaaaattataagaaacccaaattacattatcaatagcg 30671505  T
Q  101 ccatttgatcatggatttcacaaattggacc-nnnnnnncccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtag 199  Q
    || |||||||||||||||||||||| |||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30671504 ccctttgatcatggatttcacaaataggaccaaaaaaaacccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtag 30671405  T
Q  200 tagtgagtatacacaaaaatgtt 222  Q
    |||||||||| ||||||||||||    
T  30671404 tagtgagtatgcacaaaaatgtt 30671382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 22061023 - 22060803
Alignment:
Q  1 caaactctacagggacgcatcccttccttataatgcaaaaaatataagctaccagtagcattcaaaattataagaaacccaaattacagtatcaatagcg 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  22061023 caaactctacagggacgtatcccttccttataatgcaaaaaatataagctaccagtagcactcaaaattataagaaacccaaattacaatatcaatagcg 22060924  T
Q  101 ccatttgatcatggatttcacaaattggaccnnnnnnncccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtagt 200  Q
    || |||||||||||||||| |||||||||||       |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  22060923 ccctttgatcatggatttcgcaaattggacc-aaaaaccccattctttctaatctatctgattcagctattgaagagaatgaaaagactatcagagtagt 22060825  T
Q  201 agtgagtatacacaaaaatgtt 222  Q
    ||||||||||||||||||||||    
T  22060824 agtgagtatacacaaaaatgtt 22060803  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 25344698 - 25344616
Alignment:
Q  140 ccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtagtagtgagtatacacaaaaatgtt 222  Q
    ||||||||||||||  || ||||| ||| |||||||||||| ||| |  | |||||||||||||| |||||||  ||||||||    
T  25344698 ccattctttctaatttatttgatttagcgattgaagagaagcaaacgggtgtcagagtagtagtgggtatacatgaaaatgtt 25344616  T

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Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11662260 - 11662482
Alignment:
Q  1 caaactctacagggacgcatcccttccttataatgcaaaaaatataagctaccagtagcattcaaaattataag--aaacccaaattacagtatcaatag 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  11662260 caaactctacagggacgcatcccttccttataatgcaaaaaatataagctaccagtagcattcaaaattataagaaaaacccaaattacagtatcaatag 11662359  T
Q  99 cgccatttgatcatggatttcacaaattggaccnnnnnnncccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagta 198  Q
    |||| |||||| |||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  11662360 cgccctttgattatggatttcacaaattggacc-aaaaaacccattctttctaatctatctgattcagctattgaagagaaggaaaatactatcaaagta 11662458  T
Q  199 gtagtgagtatacacaaaaatgtt 222  Q
    |||||||||||||| |||||||||    
T  11662459 gtagtgagtatacaaaaaaatgtt 11662482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 24946830 - 24946748
Alignment:
Q  140 ccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtagtagtgagtatacacaaaaatgtt 222  Q
    ||||||||||||||  || ||||||||| |||||||||||| ||| || | |||||||||||||| |||||||| ||||||||    
T  24946830 ccattctttctaatttatttgattcagcgattgaagagaagtaaatgagtgtcagagtagtagtgggtatacacgaaaatgtt 24946748  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 18347946 - 18347865
Alignment:
Q  141 cattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtagtagtgagtatacacaaaaatgtt 222  Q
    |||||||||||||| || ||||||||  ||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  18347946 cattctttctaatctatttgattcagtgattgaggagaaggaaaagagtatcaaagtagtagtgagtatacacgaaaatgtt 18347865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 43304837 - 43304754
Alignment:
Q  139 cccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtagtagtgagtatacacaaaaatgtt 222  Q
    |||||||||||||||| |  | ||||| | ||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  43304837 cccattctttctaatctaattcattcaacaattgaagagaaggaaaagagtatcagagtagcagtgagtatacacgaaaatgtt 43304754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 40354404 - 40354483
Alignment:
Q  140 ccattctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtagtagtgagtatacacaaaaat 219  Q
    |||||| |||||||| |  | ||||||| | ||||||||||||||| | ||| ||||||||| ||||||||| |||||||    
T  40354404 ccattcattctaatctaattaattcagcgactgaagagaaggaaaaaagtattagagtagtaatgagtatactcaaaaat 40354483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 12867234 - 12867312
Alignment:
Q  144 tctttctaatccatctgattcagctattgaagagaaggaaaagactatcagagtagtagtgagtatacacaaaaatgtt 222  Q
    ||||||||||  || ||||||||| |||||||||||| ||| |  | |||||||||||||| ||||| || ||||||||    
T  12867234 tctttctaatttatttgattcagcgattgaagagaagcaaacgggtgtcagagtagtagtgggtataaacgaaaatgtt 12867312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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