View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14552_low_2 (Length: 481)

Name: NF14552_low_2

Description: NF14552

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14552_low_2

[»] chr8 (2 HSPs)

[»] chr6 (1 HSPs)

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 31; E-Value: 0.00000004

Query Start/End: Original strand, 172 - 206

Target Start/End: Complemental strand, 37378487 - 37378453

Alignment:

Q	172	acaacactcaatgaaatatcaatcatgtgtaatac	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37378487	acaacactcaatgaaatatcgatcatgtgtaatac	37378453	T

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Target: chr8; HSP #2

Raw Score: 29; E-Value: 0.0000007

Query Start/End: Original strand, 380 - 416

Target Start/End: Complemental strand, 37378442 - 37378406

Alignment:

Q	380	attctcattatttcccaggaataaaattcaagacatc	416	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37378442	attcttattatttcccagaaataaaattcaagacatc	37378406	T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 30; E-Value: 0.0000002

Query Start/End: Original strand, 445 - 474

Target Start/End: Complemental strand, 4605562 - 4605533

Alignment:

Q	445	aaactattatgttcaagcccaaataagcaa	474	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4605562	aaactattatgttcaagcccaaataagcaa	4605533	T

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