View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14552_low_4 (Length: 369)
Name: NF14552_low_4
Description: NF14552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14552_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 23576477 - 23576827
Alignment:
| Q |
19 |
gaattacaaaatcataccaccaccaattagtccaattctcatcactttctatcccaaatcacnnnnnnnnnnnnnnnacagaaaatcccaaatcacttaa |
118 |
Q |
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| T |
23576477 |
gaattacaaaatcataccaccaccaattagtccaattctcatcactttctatcccaaatcacttttttattttttttacagaaa-tcccaaatcacttaa |
23576575 |
T |
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| Q |
119 |
gaaggtaaatcttcaaatatgtattgacaaaa-ataaccttgaatcaaatgtcacctaatatgttatgagggtgtaaattagcacttcccctccatccat |
217 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23576576 |
gaaggtaaatcttcaaataagtattgacaaaaaataaccttgaatcaaatgtcacctaatatgttatgagggtgtaaattagcacttcccctccatccat |
23576675 |
T |
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| Q |
218 |
tgaaatccattttcccacttgtaaaagagtcatttcccctttcatcctctcaaccaaacataacatctttaatcgttcacctccattaaaatatctcccg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23576676 |
tgaaatccattttcccacttgtaaaagagtcatttcccctttcatcctctcaaccaaacataacatctttaatcgttctcctccattaaaatatctccca |
23576775 |
T |
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| Q |
318 |
tcattcaaaattttgaaccaaacagacccttggccatgtcgtacatgggatt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23576776 |
tcattcaaaattttgaaccaaacagacccttggccatgtcgaacatgggatt |
23576827 |
T |
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