View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14552_low_7 (Length: 300)
Name: NF14552_low_7
Description: NF14552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14552_low_7 |
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| [»] chr5 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 23 - 300
Target Start/End: Complemental strand, 30671860 - 30671583
Alignment:
| Q |
23 |
tcaatcaacattttttatacacaaagaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcttggattttgacaaactg |
122 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
30671860 |
tcaatcaacattttttatacacaaagaagcaagtgaatcaaagaacttgatctttctaatctatttcattcaactattgatcatggattttgacaaattg |
30671761 |
T |
|
| Q |
123 |
ataaatttcatttaagtaaaatacttaaagaaacccaagctaatttttctaagatatatttctaatctaattttatttaattagaacccatcctttctaa |
222 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30671760 |
ataaattttatttaagtaaaatacttaaagaaacccaagctaatttttctaagataaatttctaatctaattttatttaattagaacccatcctttctaa |
30671661 |
T |
|
| Q |
223 |
tatattctttcggatggattttcacaagctaattttatttaagaaaagctagctaccaaactctacagggacgcatcc |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30671660 |
tatattcttccggatggattttcacaagctaattttatttaagaaaagctagctaccaaactctacagggacgcatcc |
30671583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 9162482 - 9162409
Alignment:
| Q |
23 |
tcaatcaacattttttatacacaaagaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaac |
96 |
Q |
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|||||||||||| ||||||||||||||| |||||| ||||| ||| ||||||||||||||||| ||||||| |
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| T |
9162482 |
tcaatcaacattatttatacacaaagaataaagtgattcaaataaccctttctttctaatctatttaattcaac |
9162409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 9162227 - 9162141
Alignment:
| Q |
23 |
tcaatcaacattttttatacacaaagaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcttgga |
109 |
Q |
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|||||||||||| ||||||||||||||| |||||| ||||| || ||||||||||||||||| ||||| | ||||||| |||| |
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| T |
9162227 |
tcaatcaacattatttatacacaaagaataaagtgattcaaataatcctttctttctaatctatttaattcagcaattgatcatgga |
9162141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 300
Target Start/End: Original strand, 11662005 - 11662281
Alignment:
| Q |
23 |
tcaatcaacattttttatacacaaagaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcttggattttgacaaactg |
122 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11662005 |
tcaatcaacattttttatacacaa-gaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcatggattttgacaaactg |
11662103 |
T |
|
| Q |
123 |
ataaatttcatttaagtaaaatacttaaagaaacccaagctaatttttctaagatatatttctaatctaattttatttaattagaacccatcctttctaa |
222 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11662104 |
ataaattttatttaagtaaaatacgcaaagaaacccaagctaatttttctaagataaatttctaatctaattttatttaattagaacccatcctttctaa |
11662203 |
T |
|
| Q |
223 |
tatattctttcggatggattttcacaagctaattttatttaagaaaagctagctaccaaactctacagggacgcatcc |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11662204 |
tatattctttcggatggattttcacaagctgattttatttaagaaaagctagctaccaaactctacagggacgcatcc |
11662281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 300
Target Start/End: Complemental strand, 34723131 - 34722854
Alignment:
| Q |
23 |
tcaatcaacattttttatacacaaagaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcttggattttgacaaactg |
122 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
34723131 |
tcaattaacattttttatacacaaagaagcaagtgaatcaaagaacttgatctttctaatctatttcattcaactattgatcatggattttgacaaaccg |
34723032 |
T |
|
| Q |
123 |
ataaatttcatttaagtaaaatacttaaagaaacccaagctaatttttctaagatatatttctaatctaattttatttaattagaacccatcctttctaa |
222 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34723031 |
ataaattttatttaagtaaaatacttaaagaaacccaacctaatttttctaagataaatttctaatctaattttatttaattagaacccatcctttctaa |
34722932 |
T |
|
| Q |
223 |
tatattctttcggatggattttcacaagctaattttatttaagaaaagctagctaccaaactctacagggacgcatcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34722931 |
tatattctttcggatggattttcacaagctaattttatttaagaaaagctagctaccaaactctacagggacgcatcc |
34722854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 23 - 300
Target Start/End: Complemental strand, 19614530 - 19614254
Alignment:
| Q |
23 |
tcaatcaacattttttatacacaaagaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcttggattttgacaaactg |
122 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19614530 |
tcaatcaacattttttatacacaa-gaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcatggattttgacaaactg |
19614432 |
T |
|
| Q |
123 |
ataaatttcatttaagtaaaatacttaaagaaacccaagctaatttttctaagatatatttctaatctaattttatttaattagaacccatcctttctaa |
222 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19614431 |
ataaattttatttaagtaaaataagcaaagaaacccaagctaatttttctaagataaatttctaatctaattttatttagttagaacccatcctttctaa |
19614332 |
T |
|
| Q |
223 |
tatattctttcggatggattttcacaagctaattttatttaagaaaagctagctaccaaactctacagggacgcatcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19614331 |
tatattctttcggatggattttcacaagctgattttatttaagaaaagctagctaccaaactctacagggacgcatcc |
19614254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 44721938 - 44722027
Alignment:
| Q |
23 |
tcaatcaacattttttatacacaaagaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcttggattt |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| ||||| ||| ||||||||||||||| | ||||| | ||||||| ||||||| |
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| T |
44721938 |
tcaatcaacattatttatacacaaagaataaagtgattcaaataaccctttctttctaatctatataattcagcaattgatcatggattt |
44722027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 10821244 - 10821337
Alignment:
| Q |
23 |
tcaatcaacattttttatacacaaagaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcttggattttgacaa |
118 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||| ||||||||| |||||| ||||||||| ||||||| ||||||| |||||||| |||| |
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|
| T |
10821244 |
tcaatcgacattttttatacac--agaagaaagtgattcaaagaacccattcttttaaatctatttaattcaacaattgatcctggattttcacaa |
10821337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 300
Target Start/End: Complemental strand, 22061298 - 22061002
Alignment:
| Q |
23 |
tcaatcaacattttttatacacaaagaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcttggattttgacaaactg |
122 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
22061298 |
tcaatcaacattttttatacataaagaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcatggattttgacaaactg |
22061199 |
T |
|
| Q |
123 |
ataaatttcatttaagtaaaatacttaaagaaacccaagctaattttt-------------------ctaagatatatttctaatctaattttatttaat |
203 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
22061198 |
ataaattttatttaagtaaaatacgcaaagaaacccaagctaatttttctaatctaatcaaatttttctaagataaatttctaatctaattttatttaat |
22061099 |
T |
|
| Q |
204 |
tagaacccatcctttctaatatattctttcggatggattttcacaagctaattttatttaagaaaagctagctaccaaactctacagggacgcatcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
22061098 |
tagaacccatcctttctaatatattctttcggatggaatttcaaaagctaattttatttaagaaaagctagctaccaaactctacagggacgtatcc |
22061002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 43305049 - 43304960
Alignment:
| Q |
23 |
tcaatcaacattttttatacacaaagaagtaagtgaatcaaagaacttgttctttctaatctatttcattcaactattgatcttggattt |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| ||||| ||| ||||||||||||||| | ||||| | ||||||| ||||||| |
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|
| T |
43305049 |
tcaatcaacattatttatacacaaagaataaagtgattcaaataaccctttctttctaatctatataattcagcaattgatcatggattt |
43304960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 10825246 - 10825280
Alignment:
| Q |
23 |
tcaatcaacattttttatacacaaagaagtaagtg |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
10825246 |
tcaatcaacattttttatacacaaagaagtaagtg |
10825280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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