View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14552_low_9 (Length: 279)
Name: NF14552_low_9
Description: NF14552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14552_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 42427176 - 42427441
Alignment:
| Q |
1 |
taatctgtagctaatttctgaataacaaagcggtgttattttcaaagcaaaatcatgttttcatttgtatcctcaatgcataagaagcagacaaccaatg |
100 |
Q |
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| T |
42427176 |
taatctgtagctaatttctgaataacaaagcggtgttattttcaaagcaaaatcatgttttcatttgtatcctcaatgcataagaagcagacaaccaatg |
42427275 |
T |
|
| Q |
101 |
gtagcaattcttgaggggcttggtctttgtactttctagcatgcttgtttagcttctctataagtagaaatcttgcatagccttaaaatgtgatccatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42427276 |
gtagcaattcttgaggggcttggtctttgtactttctagcatgcttgtttagcttctctataagtagaaatcttgcatagccttaaaatgtgatccatgg |
42427375 |
T |
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| Q |
201 |
ccttctaattctctttttctggcctagaatgtttatttattggctaaactccctacatccctatgc |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42427376 |
ccttctaattctctttttctggcctagaatgtttatttattggctaaactccctacatccctatgc |
42427441 |
T |
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