View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14553_high_1 (Length: 552)
Name: NF14553_high_1
Description: NF14553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14553_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 22 - 388
Target Start/End: Original strand, 39077350 - 39077716
Alignment:
| Q |
22 |
acatcatcgaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttttctacctg |
121 |
Q |
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| T |
39077350 |
acatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttttctacctg |
39077449 |
T |
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| Q |
122 |
ttgcccttacaatgtggcctccttgaacttgaactatttctcctcctgtgctcttcattcccattaatcctcttgtataaattttgtgtctttgaatttg |
221 |
Q |
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| T |
39077450 |
tcgcccttacaatgtggcctccttgaacttgaactatttctcctcctgtgctcttcattcccattaatcctcttgtataaattttgtgtctttgaatttg |
39077549 |
T |
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| Q |
222 |
taaagatagttctattgtgtttctgtttcttgcgtatgcatattaatatttgtgtagtgtgaaatttgatgccacttgagtcaatgtatatgcttcaaaa |
321 |
Q |
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| T |
39077550 |
taaagatagttctattgtgtttctgtttcttgcgtatgcatattgatatttgtgtagtgtgaaatttgatgccacttgagtcaatgtatatgcttcaaaa |
39077649 |
T |
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| Q |
322 |
tttgttcttgttttgtgattattgatgcacttgcttgttgataatgacaaccactgagagtttgatt |
388 |
Q |
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| T |
39077650 |
tttgttcttgttttgtgattattgatgcacttgcttgttgataatgacaaccactgagagtttgatt |
39077716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 445 - 525
Target Start/End: Original strand, 39077774 - 39077855
Alignment:
| Q |
445 |
ctcttctaattgatgttggatttcttatagaatttcttcatgtggatac-tttttctgaagctgaaaataacccttaattct |
525 |
Q |
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| T |
39077774 |
ctcttctaattgatgttggatttcttatagaatttcttcatgtggatacttttttctgaagctgaaaataacccttaattct |
39077855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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