View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14554_high_11 (Length: 254)
Name: NF14554_high_11
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14554_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 45275597 - 45275829
Alignment:
| Q |
20 |
acgatctactccaatttggtcattgtcactttggttgtaaaaaagactacatatatgattagtggaatattaattacctgattgcaagcagtagttccta |
119 |
Q |
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| T |
45275597 |
acgatctactccaatttggtcattgtcactttggttgtaaaaaagactacatatatgattaatggaatattaattacctgattgcaagcggtagttccta |
45275696 |
T |
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| Q |
120 |
agctaactaggcgatattcatgcatgatccaatgagttcgagatccatttggagattttccttgataaaatacaagactttttcttattcccgcgattcc |
219 |
Q |
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| T |
45275697 |
agctaactaggcgatattcatgcatgatccaatgagttcgagatccatttggagattttccttgataaaatacaagactttttcttattcccgcgattcc |
45275796 |
T |
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| Q |
220 |
attacttagtgatgaagaaacactaactttctt |
252 |
Q |
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| T |
45275797 |
attacttagtgatgaagaaacactaactttctt |
45275829 |
T |
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Back To:
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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 40363760 - 40363838
Alignment:
| Q |
128 |
aggcgatattcatgcatgatccaatgagttcgagatccatttggagattttccttgataaaatacaagactttttctta |
206 |
Q |
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| T |
40363760 |
aggcgatattcatgcaagatccaatcagttctagacccatttggggatttcccttcatagaaaactagagtttttctta |
40363838 |
T |
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