View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14554_high_12 (Length: 248)
Name: NF14554_high_12
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14554_high_12 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 23011140 - 23011353
Alignment:
| Q |
17 |
atatccaactatttctcttctctacacctgtgattctctctattccttctccgtttcgtctcatcagaatatgttcaaattaatggcaaggttcttcttt |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
23011140 |
atatccaactatttctcttctctccacctgtgattctctctattccttctccgtttcgtctcgtcggaatatgttcaaattaatggcaaggttcttcttt |
23011239 |
T |
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| Q |
117 |
ttattcatattgttcttgtccatcatcattattatttgcgatttcctctttcaatataattgatttgaacagccatgatttgggtgtggtcagagtgggg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23011240 |
ttattcatattgttcttgtccatcatcattattatttgcgatttcctctttcaatataattgatttgaacagccatgatttgggtgtggtcggagtgggg |
23011339 |
T |
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| Q |
217 |
agggaggtagtcgt |
230 |
Q |
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|||||||||||||| |
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| T |
23011340 |
agggaggtagtcgt |
23011353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 53371810 - 53371598
Alignment:
| Q |
17 |
atatccaactatttctcttctctacacctgtgattctctctattccttctccgtttcgtctcatcagaatatgttcaaattaatggcaaggttcttcttt |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
53371810 |
atatccaactatttctcttctctccacctgtgattctctctattccttctctgtttcgtctcgtcggaatatgttcaaattaatggcaaggttcttcttt |
53371711 |
T |
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| Q |
117 |
ttattcatattgttcttgtccatcatcattattatttgcgatttcctctttcaatataattgatttgaacagccatgatttgggtgtggtcagagtgggg |
216 |
Q |
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| T |
53371710 |
ttattcatattgttcttgtccatcatcattactatttgcgatttcctctttcaatataattgatttgaacaaccatgatttgggtgtggtcggagtgggg |
53371611 |
T |
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| Q |
217 |
agggaggtagtcgt |
230 |
Q |
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| T |
53371610 |
a-ggaggtagtcgt |
53371598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 2929 - 2716
Alignment:
| Q |
17 |
atatccaactatttctcttctctacacctgtgattctctctattccttctccgtttcgtctcatcagaatatgttcaaattaatggcaaggttcttcttt |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
2929 |
atatccaactatttctcttctctccacctgtgattctctctattccttctctgtttcgtctcgtcggaatatgttcaaattaatggcaaggttcttcttt |
2830 |
T |
|
| Q |
117 |
ttattcatattgttcttgtccatcatcattattatttgcgatttcctctttcaatataattgatttgaacagccatgatttgggtgtggtcagagtgggg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2829 |
ttattcatattgttcttgtccatcatcattattatttgcgatttcctctttcaatataattgatttgaacagccatgatttgggtgtggtcggagtgggg |
2730 |
T |
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| Q |
217 |
agggaggtagtcgt |
230 |
Q |
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|||||||||||||| |
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| T |
2729 |
agggaggtagtcgt |
2716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 32239601 - 32239728
Alignment:
| Q |
17 |
atatccaactatttctcttctctacacctgtgattctctctattccttctccgtttcgtctcatcagaatatgttcaaattaatggcaaggttcttcttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
32239601 |
atatccaactatttctcttctctacacctgtgattctctctattccttctccgtttcgtcgaa-----atatgttcaaattaatggcaaggttcttcttt |
32239695 |
T |
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| Q |
117 |
ttattcatattgttcttgtccatcatcattatt |
149 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
32239696 |
ttattcatattgtccttgtccatcatcattatt |
32239728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 27118008 - 27118105
Alignment:
| Q |
56 |
ctattccttctccgtttcgtctcatcagaatatgttcaaattaatggcaaggttcttctttttattcatattgttcttgtccatcatcattattattt |
153 |
Q |
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|||||||||||||||||||| | || |||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||||||||| ||||||| |
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| T |
27118008 |
ctattccttctccgtttcgttccgtcggaatatgttcaaatcaatggcagggttcttctttttattcatatttttcttatccatcatcatgattattt |
27118105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 27117951 - 27117989
Alignment:
| Q |
17 |
atatccaactatttctcttctctacacctgtgattctct |
55 |
Q |
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| T |
27117951 |
atatccaactattcctcttctctccacctgtgattctct |
27117989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 7266812 - 7266908
Alignment:
| Q |
57 |
tattccttctccgtttcgtctcatcagaatatgttcaaattaatggcaaggttcttctttttattcatattgttcttgtccatcatcattattattt |
153 |
Q |
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| T |
7266812 |
tattccttcttcatttcgttccgtcggaatatgatcaaattaatggcagggttcttctttttcttcatattgttcttgtccatcatcattattattt |
7266908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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