View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14554_high_15 (Length: 226)
Name: NF14554_high_15
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14554_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 50013505 - 50013283
Alignment:
| Q |
7 |
gtaatgttagaagtctcacatcaaataaattaaagtacttgatgttgtatttaaatcatgatgtttctcatctaattgactagtcttttgaattagactc |
106 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
50013505 |
gtaatgttagaagtctcacatcaaataa-ttaaagtatttgatgtagtatttaaatcatgatgtttctcatctaattgactagtcttttgagttagattc |
50013407 |
T |
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| Q |
107 |
gttcggcagacttaagtcgtaacagaca----cttgataataacactcattgctataagcttttttgaatgatcgaagagggtaaagtgtggtagcaaac |
202 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50013406 |
gttcggcagacttaagtcgtaacagacagacacttgataataacactcattgctataagcttttttgaatgatcgaagagggtaaaatgtggtagcaaac |
50013307 |
T |
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| Q |
203 |
aatttgctataagcttcgagaatc |
226 |
Q |
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|||||||||||||||||||||||| |
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| T |
50013306 |
aatttgctataagcttcgagaatc |
50013283 |
T |
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