View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14554_high_2 (Length: 618)

Name: NF14554_high_2
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14554_high_2
NF14554_high_2
[»] chr3 (3 HSPs)
chr3 (449-594)||(2194544-2194689)
chr3 (215-403)||(2194318-2194506)
chr3 (248-293)||(28673948-28673993)
[»] chr2 (4 HSPs)
chr2 (241-298)||(29197397-29197454)
chr2 (241-296)||(19016031-19016086)
chr2 (243-295)||(37755994-37756046)
chr2 (241-297)||(39714991-39715047)
[»] chr8 (1 HSPs)
chr8 (241-297)||(28783059-28783115)
[»] chr4 (1 HSPs)
chr4 (245-293)||(3350480-3350528)
[»] chr7 (2 HSPs)
chr7 (241-296)||(23301623-23301678)
chr7 (241-297)||(2446307-2446363)
[»] chr5 (1 HSPs)
chr5 (241-297)||(30109329-30109385)
[»] chr1 (2 HSPs)
chr1 (241-297)||(40257398-40257454)
chr1 (241-297)||(51814493-51814549)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 8e-72; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 449 - 594
Target Start/End: Original strand, 2194544 - 2194689
Alignment:
Q  449 tttcatgttatcgacataacttttttgtcttactcaagaacaagacagccaacaacaacacacaagtatgtgtggtaaaccgaataataataatatgaac 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2194544 tttcatgttatcgacataacttttttgtcttactcaagaacaagacagccaacaacaacacacaagtatgtgtgttaaaccgaataataataatatgaac 2194643  T
Q  549 cgaacataacgaatttatgaaaacaaaggctgagatttgctaggat 594  Q
    | ||||||||||||||||||||||||||||||||||||||||||||    
T  2194644 ctaacataacgaatttatgaaaacaaaggctgagatttgctaggat 2194689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 215 - 403
Target Start/End: Original strand, 2194318 - 2194506
Alignment:
Q  215 taaattagctcatccaaattggcaccggaggagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgggtttgatcattcgcatattct 314  Q
    |||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| | ||||  ||||||||||||||||||||||| ||||||||||    
T  2194318 taaattagctcatctaaattggcatcggaggagcacattcctaagtctcaagtcattgctatcagaccaactcaagtgggtttgatcatccgcatattct 2194417  T
Q  315 aatagtggggtcatctctcaaattattttaccaattgagaggatccaaattcataaaaataaaagaataaaatgtcccataacaattac 403  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  2194418 aatagtggggtcatctctcaaattattttatcaattgagaagatccaaattcataaaaataaaaaaatgaaatgtctcataacaattac 2194506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 28673993 - 28673948
Alignment:
Q  248 cacattcccaagtctcaagtcattaccatcaagccaactcaagtgg 293  Q
    ||||||||| | |||||||||| ||||||||||||||| |||||||    
T  28673993 cacattccccaatctcaagtcaataccatcaagccaacccaagtgg 28673948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 29197397 - 29197454
Alignment:
Q  241 ggaggagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgggtttg 298  Q
    ||||||||||| ||||||||| ||||||| ||||| ||||||||| ||||||||||||    
T  29197397 ggaggagcacactcccaagtcccaagtcaataccaccaagccaacccaagtgggtttg 29197454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 19016086 - 19016031
Alignment:
Q  241 ggaggagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgggtt 296  Q
    ||||||||||| |||||||||||||| || ||||||||  ||||| ||||||||||    
T  19016086 ggaggagcacactcccaagtctcaagccaataccatcagaccaacccaagtgggtt 19016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 37755994 - 37756046
Alignment:
Q  243 aggagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgggt 295  Q
    ||||||||||||||| ||| |||| || ||||| ||||||||| |||||||||    
T  37755994 aggagcacattcccaggtcccaagccaataccaccaagccaacccaagtgggt 37756046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 39715047 - 39714991
Alignment:
Q  241 ggaggagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgggttt 297  Q
    ||||||||||| ||||| ||| ||||||| ||||| || |||||| |||||||||||    
T  39715047 ggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggttt 39714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 28783115 - 28783059
Alignment:
Q  241 ggaggagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgggttt 297  Q
    ||||||||||| ||||| |||||||| || ||||| ||||||||| |||||||||||    
T  28783115 ggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggttt 28783059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 3350480 - 3350528
Alignment:
Q  245 gagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgg 293  Q
    |||||||||||||| |||||||||| ||||||||  |||||||||||||    
T  3350480 gagcacattcccaaatctcaagtcaataccatcagaccaactcaagtgg 3350528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 23301623 - 23301678
Alignment:
Q  241 ggaggagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgggtt 296  Q
    ||||||||||| ||||||||| ||||||| ||||| || |||||| ||||||||||    
T  23301623 ggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggtt 23301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 2446363 - 2446307
Alignment:
Q  241 ggaggagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgggttt 297  Q
    ||||||||||| ||||||||| |||| || ||||||||  ||||| |||||||||||    
T  2446363 ggaggagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggttt 2446307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 30109329 - 30109385
Alignment:
Q  241 ggaggagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgggttt 297  Q
    ||||||||||| ||||| ||| |||| || ||||| ||||||||| |||||||||||    
T  30109329 ggaggagcacactcccaggtcacaagccaataccaccaagccaacccaagtgggttt 30109385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 40257454 - 40257398
Alignment:
Q  241 ggaggagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgggttt 297  Q
    ||||||||||| ||||| |||||||| || ||||| || |||||| |||||||||||    
T  40257454 ggaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggttt 40257398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 51814549 - 51814493
Alignment:
Q  241 ggaggagcacattcccaagtctcaagtcattaccatcaagccaactcaagtgggttt 297  Q
    ||||||||||| || ||  |||||||||| |||||||| |||||| |||||||||||    
T  51814549 ggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggttt 51814493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University