View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14554_high_6 (Length: 368)
Name: NF14554_high_6
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14554_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 352
Target Start/End: Original strand, 38627682 - 38628028
Alignment:
| Q |
6 |
gagcagagaagtgttttaatgatctcaccaactcagctgtcttaaccatgtcatgatggcctgttgagctaagtgccctatagatgacatctgattcttt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38627682 |
gagcagagaagtgttttaatgatctcaccaactcagctgtcttaaccatgtcatgatggcctgttgagctaagtgccctatagatgacatctgattcttt |
38627781 |
T |
|
| Q |
106 |
gaaggcatctgcttcaatgactactgcatttcctgatgctcctgcccagaaaggtctgtttaaatttcattcataaagaaacaacattaggttcttttaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38627782 |
gaaggcatctgcttcaatgactactgcatttcctgatgctcctgcccagaaaggtctgtttaaatttcattcataaagaaacaacattaggttcttttaa |
38627881 |
T |
|
| Q |
206 |
ttgtttatttggacgatttcaggacaagtcttgtacatcaaaactgaaaagctagatagcataaatgatagttgaaacaagaaagcaacatgttcaagat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38627882 |
ttgtttatttggacgatttcaggacaagtcttgtacatcaaaactgaaaagctagatagcataaatgatagttgaaacaagaaagcaacatgttcaagat |
38627981 |
T |
|
| Q |
306 |
cttcccttttgaaaaactaacgtagttaaatacacatgtgatgttat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38627982 |
cttcccttttgaaaaactaacgtagttaaatacacatgtgatgttat |
38628028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 201
Target Start/End: Complemental strand, 31168908 - 31168758
Alignment:
| Q |
52 |
catgtcatgatggcctgttgagctaagtgccctatagatgacatctgattctttgaaggcatctgcttcaatgactactgcatttcctgatgctcctgcc |
151 |
Q |
| |
|
|||||||||||| ||| |||| ||||| ||||||||||| ||||||||||||||||| |||||||| ||||| || || ||||| | | ||||||| || |
|
|
| T |
31168908 |
catgtcatgatgccctcttgaactaagggccctatagataacatctgattctttgaatgcatctgcctcaataacaacagcattgctagctgctcctacc |
31168809 |
T |
|
| Q |
152 |
cagaaaggtctgtttaaatttcattcataaa-gaaacaacattaggttctt |
201 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||| |||||||||||| |||||| |
|
|
| T |
31168808 |
caaaaaggcctgtttaaattccattcataaaggaaacaacattaagttctt |
31168758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University