View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14554_low_10 (Length: 304)
Name: NF14554_low_10
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14554_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 7331122 - 7331406
Alignment:
| Q |
8 |
gactctgttccccactcatccccatacaagatatactctacatatttcctcacaagaacttccttcaataatgactaatcattctgaagcaacctccatc |
107 |
Q |
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| T |
7331122 |
gactctgttccccactcatccccatacaagatatactctacatatttcctcacaagaacttccttcaataatgactaatcattctgaagcaacctccatc |
7331221 |
T |
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| Q |
108 |
tccacttagccaaaagactgagttaacgtccctatcaacgtcaaggactaaaacgactaacatagtgaatggtggaggatttaattggttctttctctgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7331222 |
tccacttagccaaaagactgagttaacgtccctatcaacgtcaaggactaaaacgactaacatagtgaatggtggaggatttaattggttctttctctgt |
7331321 |
T |
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| Q |
208 |
tagggaccaatgtgacaaggaataatactttcagggaccgaaatggtgcccattttctctttaaaagaatagaaggccttcaatg |
292 |
Q |
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| T |
7331322 |
tagggaccaatgtgacaaggaataatactttcagggaccgaaatggtgcccattttctctttaaaagaatagaaggccttcaatg |
7331406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 7330956 - 7331066
Alignment:
| Q |
8 |
gactctgttccccactcatccccatacaagatatactctacatatttcctcacaagaacttccttcaataatgactaatcattctgaagcaacctccatc |
107 |
Q |
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|||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
7330956 |
gactctgttcaccactccgccctatgcaagatatactctacatatttcctcacaagaacttccttcaataatgactaatcattttgaaacaacctccatc |
7331055 |
T |
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| Q |
108 |
tccacttagcc |
118 |
Q |
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| T |
7331056 |
tccacttagcc |
7331066 |
T |
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