View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14554_low_16 (Length: 245)

Name: NF14554_low_16
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14554_low_16
NF14554_low_16
[»] chr2 (6 HSPs)
chr2 (19-245)||(2478724-2478950)
chr2 (19-245)||(2483228-2483454)
chr2 (19-245)||(2486406-2486635)
chr2 (19-245)||(2470888-2471114)
chr2 (153-212)||(2474269-2474328)
chr2 (158-212)||(2470003-2470057)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 2478724 - 2478950
Alignment:
Q  19 agcaccggctacataagtggcacacaagcagtgaagggttgggcggatgaaaaaccacactttgataactattttaacaaatgttttgatggtgaatgtc 118  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2478724 agcactggctacataagtggcacacaagcagtgaagggttgggcggatgaaaaaccacactttgataactatcttaacaaatgttttgatggtgaatgtc 2478823  T
Q  119 atcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaattattatcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2478824 atcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaattattatcc 2478923  T
Q  219 cccaggtaacattcctggccaattacc 245  Q
    |||||||||||||||||||||||||||    
T  2478924 cccaggtaacattcctggccaattacc 2478950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 2483228 - 2483454
Alignment:
Q  19 agcaccggctacataagtggcacacaagcagtgaagggttgggcggatgaaaaaccacactttgataactattttaacaaatgttttgatggtgaatgtc 118  Q
    ||||||||  |||| ||||| | | |||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2483228 agcaccggacacatcagtggaagaaaagcagtgaagttgtgggcggatgaaaaaccacactttgataactatcttaacaaatgttttgatggtgaatgtc 2483327  T
Q  119 atcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaattattatcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2483328 atcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaattattatcc 2483427  T
Q  219 cccaggtaacattcctggccaattacc 245  Q
    ||||||||| |||||||||||||||||    
T  2483428 cccaggtaatattcctggccaattacc 2483454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 2486406 - 2486635
Alignment:
Q  19 agcaccggctacataagtggcacacaagcagtgaagggttgggcggatgaaaaaccacactttgataactattttaacaaatgttttgatggt---gaat 115  Q
    ||||||||||||||||||||| |  |||||||||||   |||| ||||||| ||||| ||||| || |||||  ||||  |||| ||||||||   ||||    
T  2486406 agcaccggctacataagtggcgcggaagcagtgaagttgtgggtggatgaagaaccatactttaatcactatgctaactcatgtattgatggtcatgaat 2486505  T
Q  116 gtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaattatta 215  Q
    | || |||| ||| ||||||||||||  |   ||||||||| ||||||||||||||||||||||| ||||||||||  ||||||||||||| |||||| |    
T  2486506 gccaccattatactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggctcatttgttacttgcaattatga 2486605  T
Q  216 tcccccaggtaacattcctggccaattacc 245  Q
    |||||| ||||||||| |||||||||||||    
T  2486606 tccccctggtaacattgctggccaattacc 2486635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 2470888 - 2471114
Alignment:
Q  19 agcaccggctacataagtggcacacaagcagtgaagggttgggcggatgaaaaaccacactttgataactattttaacaaatgttttgatggtgaatgtc 118  Q
    |||||||||||||  |||| || | | |||||||||  ||||| ||| ||  | ||||||| |||| |||||  ||||  |||| ||| |||||||||||    
T  2470888 agcaccggctacaagagtgtcagagatgcagtgaagatttgggtggaggaggagccacactatgatcactataataactcatgtgttggtggtgaatgtc 2470987  T
Q  119 atcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaattattatcc 218  Q
     ||||| |||||||||  | |||  |   |||| |||| |||||||||||||||||| |||| ||||||| || |||||  ||||||| |||||| | ||    
T  2470988 ttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgaccc 2471087  T
Q  219 cccaggtaacattcctggccaattacc 245  Q
     || ||||||||| |||| ||||||||    
T  2471088 acctggtaacattgctggtcaattacc 2471114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 2474269 - 2474328
Alignment:
Q  153 acgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta 212  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||  ||||||| |||||    
T  2474269 acgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta 2474328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 2470003 - 2470057
Alignment:
Q  158 ttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta 212  Q
    ||||||||| |||||||||||||||||| || ||||||||  ||||||| |||||    
T  2470003 ttggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaatta 2470057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University