View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14554_low_20 (Length: 217)

Name: NF14554_low_20
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14554_low_20
NF14554_low_20
[»] chr6 (29 HSPs)
chr6 (1-217)||(4266689-4266905)
chr6 (1-217)||(4574701-4574917)
chr6 (1-217)||(4489878-4490094)
chr6 (3-217)||(4457989-4458204)
chr6 (1-217)||(4560899-4561113)
chr6 (1-217)||(3172134-3172350)
chr6 (1-217)||(4481086-4481302)
chr6 (3-217)||(4503920-4504134)
chr6 (1-217)||(4514644-4514860)
chr6 (20-217)||(4470215-4470412)
chr6 (1-217)||(4461516-4461732)
chr6 (1-217)||(4598564-4598780)
chr6 (23-217)||(4506272-4506466)
chr6 (1-217)||(4613241-4613457)
chr6 (3-217)||(4516716-4516930)
chr6 (1-217)||(4571365-4571581)
chr6 (1-217)||(4564104-4564320)
chr6 (1-217)||(4579825-4580041)
chr6 (17-217)||(4586045-4586245)
chr6 (20-217)||(4557537-4557734)
chr6 (17-217)||(4256147-4256347)
chr6 (20-217)||(4626363-4626560)
chr6 (1-217)||(4592624-4592840)
chr6 (17-217)||(4259677-4259877)
chr6 (17-217)||(4299344-4299544)
chr6 (17-217)||(4622551-4622749)
chr6 (17-217)||(4602198-4602398)
chr6 (17-217)||(4617431-4617631)
chr6 (20-114)||(4568468-4568562)
[»] chr5 (2 HSPs)
chr5 (4-217)||(24103395-24103608)
chr5 (1-86)||(27999753-27999838)
[»] chr7 (1 HSPs)
chr7 (1-217)||(3086813-3087029)
[»] chr8 (3 HSPs)
chr8 (1-217)||(1674619-1674835)
chr8 (1-217)||(20863366-20863582)
chr8 (17-217)||(16685790-16685990)
[»] scaffold0288 (1 HSPs)
scaffold0288 (20-217)||(3242-3439)
[»] scaffold0477 (1 HSPs)
scaffold0477 (17-217)||(4209-4409)
[»] chr3 (1 HSPs)
chr3 (17-217)||(1281523-1281723)
[»] scaffold0199 (1 HSPs)
scaffold0199 (149-217)||(4-72)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4266905 - 4266689
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4266905 aatttctttaaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 4266806  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4266805 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagatcttggttcttttgattcaagccactcaagac 4266706  T
Q  201 atttagtatcttctttc 217  Q
    |||||||||||||||||    
T  4266705 atttagtatcttctttc 4266689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4574701 - 4574917
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||    
T  4574701 aatttctttcaaaaaatcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatccacaaaaagggttttttgctgttggccaaaccc 4574800  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    ||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  4574801 caagcaaactctacgagcttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcttggttcttttgattcaatccattcaagac 4574900  T
Q  201 atttagtatcttctttc 217  Q
    |||||||||||||||||    
T  4574901 atttagtatcttctttc 4574917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4490094 - 4489878
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    ||||||||||||||||||||||||||| ||   |||||| ||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||    
T  4490094 aatttctttcaaaaaatcagatgacaacacctgtgagccaccaataacaagatcaggcctaatgatccacaaaaagggtttcttgctgttggccaaaccc 4489995  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    || ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  4489994 catgcaaactctaatagcttctctcgagacataacagtgatgctgccaaaatttacataaacaacagatcctggttcttttgattcaagccattcaagac 4489895  T
Q  201 atttagtatcttctttc 217  Q
    |||||||||||||||||    
T  4489894 atttagtatcttctttc 4489878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 4457989 - 4458204
Alignment:
Q  3 tttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggtt-cttgctgttggccaaacccc 101  Q
    |||| |||| |||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| |||    
T  4457989 tttcattcacaaaatccgatgacaaaacaaccgagccaccaatgacaagatcaggcctagttatccacaaaaaaggttttcttgctgttggccaaaaccc 4458088  T
Q  102 aagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagaca 201  Q
    ||||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  4458089 aagcaaattctaagagcttctcttgagacataactgtgatgcttccaaaatttacataaataacagactttggttcttttgattcaagccactcaagaca 4458188  T
Q  202 tttagtatcttctttc 217  Q
    |||||||| |||||||    
T  4458189 tttagtatattctttc 4458204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4560899 - 4561113
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||||||||||| ||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||    
T  4560899 aatttctttcaaaa-atcagatgagaaaaccaccgagccaccaatgacaagatcaggcctaatgatccataaaaatggtttcttgctgttggccaaaccc 4560997  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    ||||||||||||||| |||||||| | ||| |||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  4560998 caagcaaactctaag-gcttctcttgagacttaacagtgatgctgccaaaatttacataaacaacagatcctggttcttttgattcaagccattcaagac 4561096  T
Q  201 atttagtatcttctttc 217  Q
    |||||||||||||||||    
T  4561097 atttagtatcttctttc 4561113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 3172134 - 3172350
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||| |||| ||| || |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||    
T  3172134 aatttcattcacaaactccgatgacaaaacaaccgagccaccaatgacaagatcaggcctaataatccacaaaaagggtttcttgctgttggctaaaccc 3172233  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    |||||||||||||| |  |||||| | ||||||||| ||||||| |||||||||||||||||||||||  ||| |||||||| ||||||||| |||||||    
T  3172234 caagcaaactctaataatttctcttgagacataactatgatgctgccaaaatttacataaacaacagattttgattcttttgtttcaagccattcaagac 3172333  T
Q  201 atttagtatcttctttc 217  Q
    |||||||||||||||||    
T  3172334 atttagtatcttctttc 3172350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4481086 - 4481302
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    ||||||||||||| | ||||||||||| || |||||||| ||||||||||||| || |||||| |||||||||||    || ||||| ||||| ||||||    
T  4481086 aatttctttcaaatactcagatgacaacaccactgagccaccaatgacaagattagacctaataatccacaaaaagttttttttgctattggcaaaaccc 4481185  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    ||||||||||||||||| |||||| | ||||||| ||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  4481186 caagcaaactctaagagtttctcttgagacataattgtgatgctgccaaaatttacataaacaacagatcctggttcttttgattcaagccattcaagac 4481285  T
Q  201 atttagtatcttctttc 217  Q
    |||||||||||||||||    
T  4481286 atttagtatcttctttc 4481302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 4504134 - 4503920
Alignment:
Q  3 tttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaacccca 102  Q
    |||| |||| ||||||||||||||| ||  ||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  4504134 tttcattcacaaaatcagatgacaacacctctgagccaccaataacaagatcaggcctaataatccacaaaaaaggtttcttgctattggccaaacccca 4504035  T
Q  103 agcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacat 202  Q
    |||||||||||| |  || |||   ||||||||||| ||||| ||||||||||||||||||||||| | |||||||||| |||||||||| |||||||||    
T  4504034 agcaaactctaacaatttatcttaagacataactgtaatgctgccaaaatttacataaacaacagatcctggttcttttaattcaagccaatcaagacat 4503935  T
Q  203 ttagtatcttctttc 217  Q
    |||||||||||||||    
T  4503934 ttagtatcttctttc 4503920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4514860 - 4514644
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||| |||| ||| ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| |  |||||||| ||||||||||||    
T  4514860 aatttcattcacaaactcagacgacaaaaccactgagccaccaatgacaagatcaggcctaatgatccataaaaaggttttcttgctattggccaaaccc 4514761  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    |||||||||||||| |  |||||  | |||||||  ||||||||||||||||| |||||||||||||| | || |||||||||||||||||| |||||||    
T  4514760 caagcaaactctaacaatttctccggagacataatcgtgatgctaccaaaattaacataaacaacagatcctgattcttttgattcaagccattcaagac 4514661  T
Q  201 atttagtatcttctttc 217  Q
    |||||||||||||||||    
T  4514660 atttagtatcttctttc 4514644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 4470215 - 4470412
Alignment:
Q  20 gatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaagagct 119  Q
    ||||| ||||| || ||||| |||||||||||||| |||||||| ||||||||||| || | |||||| || ||||||||||||||||||||||| || |    
T  4470215 gatgagaaaactaccgagccgccaatgacaagatcgggcctaatgatccacaaaaagggttgcttgctatttgccaaaccccaagcaaactctaacagtt 4470314  T
Q  120 tctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttctttc 217  Q
    ||||| | ||||||||||||| ||| || ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  4470315 tctctggagacataactgtgacgctgccgaaatttacatagacaacagatcctggttcttttgattcaagccactcaagacatttagtatcttctttc 4470412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4461516 - 4461732
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||| |||| ||| ||||||||||||| ||  ||||| ||||||||||||||||||||||| ||||| ||||| || |||||||| |  |||||||||    
T  4461516 aatttcattcacaaactcagatgacaaaataaacgagccgccaatgacaagatcaggcctaatgatccataaaaagggtttcttgctatcagccaaaccc 4461615  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    |||||||||||||| || |  ||  | | ||||||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||| |||||||    
T  4461616 caagcaaactctaacagttgatcaggagtcataactgtgatgctgccaaaatttacatagacaacagatcctggttcttttgattcaagccattcaagac 4461715  T
Q  201 atttagtatcttctttc 217  Q
    |||||||||||||||||    
T  4461716 atttagtatcttctttc 4461732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4598564 - 4598780
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||| |||| ||| || |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||    
T  4598564 aatttcattcacaaactccgatgacaaaacaaccgagccaccaatgacaagatcaggcctaatgatccacaaaaagggtttcttgctattggccaaaccc 4598663  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    |||||||| ||||| | ||| |||   | ||| || || ||||| |||||||| ||||||||||||||||||||||| || ||||||||||| |||||||    
T  4598664 caagcaaagtctaacaacttttctgcagtcatcaccgttatgctcccaaaattcacataaacaacagaccttggttcattggattcaagccagtcaagac 4598763  T
Q  201 atttagtatcttctttc 217  Q
    | || ||||||||||||    
T  4598764 acttggtatcttctttc 4598780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 4506272 - 4506466
Alignment:
Q  23 gacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaagagcttct 122  Q
    |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||| |  ||||    
T  4506272 gacaaaaccactgagccaccaattacaagatcaggcctaatgatccacaaaaagggtttcttgctattggccaaaccccaagcaaactctaaaaatttct 4506371  T
Q  123 ctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttctttc 217  Q
    |  | ||||||| ||||||||| |||||||| ||||||||||||||    |||||||||||||| ||||| || |||||||||||||| ||||||    
T  4506372 ccggagacataattgtgatgcttccaaaattcacataaacaacagaagccggttcttttgattccagccattcgagacatttagtatcctctttc 4506466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4613457 - 4613241
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||| |||| ||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || | |||||| || |||||||||    
T  4613457 aatttcattcacaaactctgatgacaaaacaactgagccgccaatgacaagatcaggcctaatgatccacaaaaagggttgcttgctattcgccaaaccc 4613358  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    |||||||||||||| || || |||   | |||||| || ||||| |||||||| ||||||||||| ||| | ||||| || ||||||||||| |||||||    
T  4613357 caagcaaactctaatagtttttctgcagtcataacggtcatgctcccaaaattcacataaacaacggacttcggttccttggattcaagccaatcaagac 4613258  T
Q  201 atttagtatcttctttc 217  Q
    | || ||||||||||||    
T  4613257 acttggtatcttctttc 4613241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 4516716 - 4516930
Alignment:
Q  3 tttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaacccca 102  Q
    |||| |||| |||||| |||||||||| ||| ||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  4516716 tttcattcacaaaatcggatgacaaaataaccgagccaccaatgacaaggtcaggcctaataatccacaaaaaaggtttcttgctgttggccaaacccca 4516815  T
Q  103 agcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacat 202  Q
    ||| |||||||| || |  ||| | | ||| || |||||||| |||||||| |||||||| ||||| | | |||| || ||||||||||| |||||||||    
T  4516816 agcgaactctaacagttgatctggagtcatgaccgtgatgcttccaaaattcacataaactacagaaccttgttccttagattcaagccattcaagacat 4516915  T
Q  203 ttagtatcttctttc 217  Q
    ||  |||||||||||    
T  4516916 ttcatatcttctttc 4516930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4571365 - 4571581
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||| |||| ||| || |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||  | | |||||| || || ||||||    
T  4571365 aatttcattcacaaactccgatgacaaaacaactgagccaccaatgacaagatcgggcctaatgatccacaaaaagagttgcttgctatttgctaaaccc 4571464  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    || ||||||||||| || || |||   | |||||||||  |||| |||||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||    
T  4571465 catgcaaactctaacagtttttctgaagtcataactgtcctgctcccaaaattcacataaacaacggacctcggttcctttgattcaagccaatcaagac 4571564  T
Q  201 atttagtatcttctttc 217  Q
    | ||  |||||||||||    
T  4571565 acttgttatcttctttc 4571581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4564104 - 4564320
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||| |||| ||| |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| || || ||||  |||||||| |||    
T  4564104 aatttcattcacaaactcagatgacaaaacgactgagccaccaatgacaaggtcaggcctaatgatccacaaaaagggtttattgcaattggccaacccc 4564203  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    |||||||| || || || |  | | ||| ||||||||| ||||| |||||||| ||||||||||| || |  || || || ||||||||||| |||||||    
T  4564204 caagcaaattccaacagttgttttggtgtcataactgtaatgcttccaaaattcacataaacaacggatcccggctccttggattcaagccattcaagac 4564303  T
Q  201 atttagtatcttctttc 217  Q
    | |||||||||||||||    
T  4564304 acttagtatcttctttc 4564320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4579825 - 4580041
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||| |||| ||| || |||||||||||| ||||||| || ||||||||||| |||||||| ||||||||||| || | |||||| || || ||||||    
T  4579825 aatttcattcacaaactccgatgacaaaacagctgagccgccgatgacaagatcgggcctaatgatccacaaaaagggttgcttgctatttgctaaaccc 4579924  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    || ||||||||||| || || |||   | ||||||||| | ||| |||||||| ||||||||||||||||| ||||| || ||||||||||| | |||||    
T  4579925 catgcaaactctaacagtttttctgcagtcataactgtcaagctcccaaaattcacataaacaacagacctaggttccttggattcaagccaataaagac 4580024  T
Q  201 atttagtatcttctttc 217  Q
    | || ||||||||||||    
T  4580025 acttggtatcttctttc 4580041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 4586045 - 4586245
Alignment:
Q  17 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaaga 116  Q
    |||||||||||||| |  || || ||||||||||||||||| ||||| ||||| |||||| | | |||||| |||||||||||||||||||||||||| |    
T  4586045 tcagatgacaaaaccaaggaaccaccaatgacaagatcaggtctaatgatccataaaaaatgttgcttgctattggccaaaccccaagcaaactctaata 4586144  T
Q  117 gcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttcttt 216  Q
    | || |||   | |||||||||  |||| |||||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||| || ||||| |||||    
T  4586145 gtttttctgtagtcataactgttgtgctcccaaaattcacataaacaacggacctcggttcctttgattcaagccaatcaagacacttggtatcctcttt 4586244  T
Q  217 c 217  Q
    |    
T  4586245 c 4586245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 4557537 - 4557734
Alignment:
Q  20 gatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaagagct 119  Q
    |||||||||||||||||||| || ||||||||||| |||||||| ||||||||||| || | |||||| || || |||||||| ||||||||||| || |    
T  4557537 gatgacaaaacaactgagccaccgatgacaagatcgggcctaatgatccacaaaaagggttgcttgctatttgctaaaccccatgcaaactctaacagtt 4557636  T
Q  120 tctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttctttc 217  Q
    | |||   | ||||||||| ||||| |||||||| ||||||||||| ||||| ||||| || |||||||||||  ||||||| ||  |||||||||||    
T  4557637 tttctgccgtcataactgtcatgctcccaaaattcacataaacaacggacctcggttccttggattcaagccaaccaagacacttgttatcttctttc 4557734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 4256347 - 4256147
Alignment:
Q  17 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaaga 116  Q
    ||||||||||||| ||  ||||| |||||||| || ||||||||||| || |||||||| || |||||||| |||||||| ||||||||||||||||| |    
T  4256347 tcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatacacaaaaatggtttcttgctattggccaatccccaagcaaactctaaca 4256248  T
Q  117 gcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttcttt 216  Q
    | |  ||| | | ||||||||| ||||| |||||||| || ||||||||||||   ||||| || ||||||||||| |||||||| || |||||||||||    
T  4256247 gttgatctggagtcataactgtaatgctgccaaaattcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttcttt 4256148  T
Q  217 c 217  Q
    |    
T  4256147 c 4256147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 4626363 - 4626560
Alignment:
Q  20 gatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaagagct 119  Q
    |||||| ||| || |||||| ||||| ||||||||||||||||| ||||||||||| || |||||||| |  ||||||||||||||||||||||| || |    
T  4626363 gatgacgaaataaatgagccaccaatcacaagatcaggcctaatgatccacaaaaagggtttcttgctatcagccaaaccccaagcaaactctaacagtt 4626462  T
Q  120 tctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttctttc 217  Q
    ||| | | | ||||||| | | ||| ||||| || ||||||||||||||| ||||||| ||  |||||||||| |||||||| || || |||||||||    
T  4626463 tctgtggagtcataactataacgctgccaaagttcacataaacaacagactttggttccttgaattcaagccattcaagacaattggtgtcttctttc 4626560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4592624 - 4592840
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||| |||| ||| || ||||||||||||| || ||| ||||||||||||||||||||||| |||||||||||||| || ||||  ||||||||||||    
T  4592624 aatttcattcacaaactccgatgacaaaacaattgtgccaccaatgacaagatcaggcctaatgatccacaaaaaaggtttattgcaattggccaaaccc 4592723  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    |||||||||||||| |  ||||||     ||||||||| | ||| || ||||| ||||||||||| || |  | ||| || ||||||||||| | |||||    
T  4592724 caagcaaactctaacattttctcttcattcataactgtaaggctgccgaaattcacataaacaacggaacccgattccttcgattcaagccatttaagac 4592823  T
Q  201 atttagtatcttctttc 217  Q
    | | |||||||||||||    
T  4592824 actcagtatcttctttc 4592840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 4259877 - 4259677
Alignment:
Q  17 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaaga 116  Q
    ||||||||||||| ||  ||||| ||||| |  || ||||||||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||| |    
T  4259877 tcagatgacaaaataaaggagccaccaataatgaggtcaggcctaatgatccacaaaaagggtttcttgctattggccaatccccaagcaaactctaaaa 4259778  T
Q  117 gcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttcttt 216  Q
      |  ||| | | ||||||||| ||||| |||||||| || ||||||||||||   ||||| ||  |||||||||| ||||||||||| |||||||||||    
T  4259777 attgatctggagtcataactgtaatgctgccaaaattcacgtaaacaacagactcaggttccttaaattcaagccattcaagacatttggtatcttcttt 4259678  T
Q  217 c 217  Q
    |    
T  4259677 c 4259677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 4299544 - 4299344
Alignment:
Q  17 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaaga 116  Q
    ||||||||||||| ||   |||| ||||||||||| || |||||||| ||||||||||| || ||| |||  ||||||||||||||||||| |||||| |    
T  4299544 tcagatgacaaaataaacaagccgccaatgacaaggtctggcctaatgatccacaaaaatggtttcctgcaattggccaaaccccaagcaatctctaaca 4299445  T
Q  117 gcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttcttt 216  Q
    | | |||| | | ||||||||| | ||| |||||||| ||||||||||| || |  || || || ||||||||||| ||||||||||| |||||||||||    
T  4299444 gttgctctggagtcataactgtaacgctgccaaaattcacataaacaaccgatcccggctccttggattcaagccattcaagacatttggtatcttcttt 4299345  T
Q  217 c 217  Q
    |    
T  4299344 c 4299344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 4622551 - 4622749
Alignment:
Q  17 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaaga 116  Q
    ||||||||||||| ||  ||||| || |||||||| ||||||||||| ||||||||||| || |||||||| |  ||||||||||||||||||||||| |    
T  4622551 tcagatgacaaaataaacgagccgcccatgacaaggtcaggcctaatgatccacaaaaagggtttcttgctatcagccaaaccccaagcaaactctaata 4622650  T
Q  117 gcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttcttt 216  Q
    | |  ||||| | ||| ||||| ||||| |||||||| || ||||||| || |   ||||| || |||||||||||||||||||| ||  ||||||||||    
T  4622651 gttgatctcgagtcatcactgtaatgctgccaaaattcacgtaaacaagagtc--aggttccttggattcaagccactcaagacacttgatatcttcttt 4622748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 4602198 - 4602398
Alignment:
Q  17 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaaga 116  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||| ||||||||||| || || | ||  ||||||||||||||||| || ||||| |    
T  4602198 tcagatgacaaaatcactgagccaccaatgacaagatcaggcctaatgatccacaaaaatggtttatggcaattggccaaaccccaagcgaattctaata 4602297  T
Q  117 gcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttcttt 216  Q
      |  |   ||| ||||||||| ||||| |||||||| ||||||||||| || |  || || || ||||||||||| |||||||| | ||||||||||||    
T  4602298 attgatggggtgtcataactgtaatgctgccaaaattcacataaacaacggatcccggctccttggattcaagccattcaagacactcagtatcttcttt 4602397  T
Q  217 c 217  Q
    |    
T  4602398 c 4602398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 4617431 - 4617631
Alignment:
Q  17 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaaga 116  Q
    |||||||| ||||  |||||||| |||||||||||||||||||| || ||||||||||| |  |||||||  |||||||||||||||||||| || |  |    
T  4617431 tcagatgagaaaatcactgagccaccaatgacaagatcaggccttatgatccacaaaaatgatttcttgcaattggccaaaccccaagcaaattccagta 4617530  T
Q  117 gcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttcttt 216  Q
      | |||  ||| ||||||||| ||||| || ||||| ||||||||||| || |  || || || ||||||||||| |||||||| |  |||||||||||    
T  4617531 attgctcgggtgtcataactgtaatgctgccgaaattcacataaacaactgatcccggctccttggattcaagccaatcaagacactctgtatcttcttt 4617630  T
Q  217 c 217  Q
    |    
T  4617631 c 4617631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 4568468 - 4568562
Alignment:
Q  20 gatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaa 114  Q
    |||||||||| ||||||||| ||||||||||| | ||||||||| |||||||||||||| |||||||||||||| ||||| ||||  ||||||||    
T  4568468 gatgacaaaataactgagccaccaatgacaagctaaggcctaatgatccacaaaaaaggtttcttgctgttggcaaaacctcaagagaactctaa 4568562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 24103395 - 24103608
Alignment:
Q  4 ttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaa 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24103395 ttctttaaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctattggccaaaccccaa 24103494  T
Q  104 gcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  24103495 gcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaactgatcttggttcttttgattcaagccactcaagacatt 24103594  T
Q  204 tagtatcttctttc 217  Q
    ||||||||||||||    
T  24103595 tagtatcttctttc 24103608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 27999838 - 27999753
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgc 86  Q
    ||||||||||  ||| |||||||||||||| |||||||| ||||||||||||| ||||||| | |||||||||||||| |||||||    
T  27999838 aatttctttcctaaactcagatgacaaaaccactgagccaccaatgacaagattaggcctagtgatccacaaaaaaggtttcttgc 27999753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 3086813 - 3087029
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    ||||||||||  ||| |||||||||| || ||  ||||| ||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||    
T  3086813 aatttctttctcaaactcagatgacataataaaggagccgccaatgacaagatcaggcctaatgatccacaaaaatggtttcttgctattggccaaaccc 3086912  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    |||||||||||||| || | |||| | | ||||||||| ||||| |||||| | |||||||||||||||    || | |||||||||||||| |||||||    
T  3086913 caagcaaactctaatagttgctcttgagtcataactgtaatgctgccaaaactcacataaacaacagactcaagtccctttgattcaagccattcaagac 3087012  T
Q  201 atttagtatcttctttc 217  Q
    | || ||||||||||||    
T  3087013 acttggtatcttctttc 3087029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1674619 - 1674835
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    ||||||||||| ||| |||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||||||| |||||||  | ||||||||||    
T  1674619 aatttctttcataaactcagatgacaaaaccactgagccaccaatgacaagatcaggcctagtgatccacaaaaaaggtttcttgcaatcggccaaaccc 1674718  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    ||||||||||| || || |  ||| | | ||||||  | |||||||| ||||| ||||||||||| || |  ||||| || ||||||||||| |||||||    
T  1674719 caagcaaactccaatagttgatctggagtcataacaataatgctaccgaaattcacataaacaaccgatcccggttcgttggattcaagccattcaagac 1674818  T
Q  201 atttagtatcttctttc 217  Q
    | | |||||||||||||    
T  1674819 actcagtatcttctttc 1674835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 20863582 - 20863366
Alignment:
Q  1 aatttctttcaaaaaatcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccc 100  Q
    |||||| |||| |||  ||||||| ||||  || ||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||    
T  20863582 aatttcattcacaaacgcagatgaaaaaatcaccgagccaccaatgacaagatcaggcctaatgatccacaaaaagggtttcttgctgttggccaaaccc 20863483  T
Q  101 caagcaaactctaagagcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagac 200  Q
    || ||||||||||| |  || |||   ||||| |||||| | || |||||||||||||| |||| ||| |  |||||||| |||||||||||  ||||||    
T  20863482 catgcaaactctaacaatttttctacagacatgactgtggtactgccaaaatttacatatacaatagatcccggttctttcgattcaagccatgcaagac 20863383  T
Q  201 atttagtatcttctttc 217  Q
    ||| ||| |||||||||    
T  20863382 attcagtgtcttctttc 20863366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 16685990 - 16685790
Alignment:
Q  17 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaaga 116  Q
    |||||||||||||| || || || | |||||||||||||| |||||| |||||   |||| | | |||||| |||| ||||||||||||||||||||| |    
T  16685990 tcagatgacaaaaccacggaaccgcaaatgacaagatcagacctaatgatccattgaaaatgttgcttgctattggtcaaaccccaagcaaactctaata 16685891  T
Q  117 gcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttcttt 216  Q
    | || |||   | ||||||||| ||||| |||||||| ||||||||||| || || ||||| || ||||||||||| |||||||| || ||||||| |||    
T  16685890 gtttttctgcagtcataactgtcatgctcccaaaattcacataaacaacggaactcggttccttggattcaagccaatcaagacacttggtatcttattt 16685791  T
Q  217 c 217  Q
    |    
T  16685790 c 16685790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 3439 - 3242
Alignment:
Q  20 gatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaagagct 119  Q
    |||||||||| ||  ||||| ||||||||||||||||||||||| ||||||||||| || |||||||| | |||||||||||||||||| ||||| || |    
T  3439 gatgacaaaataaacgagccgccaatgacaagatcaggcctaatgatccacaaaaacggtttcttgctatcggccaaaccccaagcaaattctaacagtt 3340  T
Q  120 tctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttctttc 217  Q
      | | | | ||||||||| ||||| || ||||| |||||||||||||||   ||||| || ||||| ||||| |||||||| || ||||||||||||    
T  3339 gatttggagtcataactgtaatgctgccgaaattcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttctttc 3242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 4409 - 4209
Alignment:
Q  17 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaaga 116  Q
    ||||||||||||| ||  ||||| ||||||||||| ||||||||||| ||||||||||| |  ||||| |  |||| |||| |||||||||||||||| |    
T  4409 tcagatgacaaaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaaggatttcttacaattggtcaaaacccaagcaaactctaaca 4310  T
Q  117 gcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttcttt 216  Q
    | |  ||| | | ||||||||| ||||| |||||||| ||||||||||| |||   ||||| || ||| |||||||||||||||| || |||||||||||    
T  4309 gttgatctggagtcataactgtaatgcttccaaaattcacataaacaaccgactcaggttccttggatgcaagccactcaagacacttggtatcttcttt 4210  T
Q  217 c 217  Q
    |    
T  4209 c 4209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 1281523 - 1281723
Alignment:
Q  17 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaaga 116  Q
    |||||||||||||  |||||||| ||||||||||||||||||||| | ||||||||||| || |||||||| || |||| |||||||||||| ||    |    
T  1281523 tcagatgacaaaatcactgagccgccaatgacaagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaa 1281622  T
Q  117 gcttctctcgtgacataactgtgatgctaccaaaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttcttt 216  Q
    | | |||| | | ||||||||| ||||| || ||||| |||||||||||||| || ||||| || ||||||||||| | |||||| |   ||||||||||    
T  1281623 gttgctctggagtcataactgtaatgcttccgaaattcacataaacaacagatctcggttccttcgattcaagccattgaagacactcgatatcttcttt 1281722  T
Q  217 c 217  Q
    |    
T  1281723 c 1281723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 4 - 72
Alignment:
Q  149 aaatttacataaacaacagaccttggttcttttgattcaagccactcaagacatttagtatcttctttc 217  Q
    ||||| ||||||||||| || |  ||||| || ||||||||||| |||||||| | |||||||||||||    
T  4 aaattcacataaacaaccgatcccggttcgttggattcaagccattcaagacactcagtatcttctttc 72  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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