View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14554_low_22 (Length: 206)

Name: NF14554_low_22
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14554_low_22
NF14554_low_22
[»] chr1 (6 HSPs)
chr1 (1-206)||(15754618-15754823)
chr1 (1-206)||(15765302-15765507)
chr1 (1-172)||(15778967-15779138)
chr1 (1-183)||(15728862-15729044)
chr1 (4-183)||(15736639-15736818)
chr1 (2-55)||(33412853-33412906)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 15754618 - 15754823
Alignment:
Q  1 tgcaatatcaatcatcacattcttggcaggcacacctttttatagacacaaattgattaaagggagtccatttattagcatggctaaggtcattgtggca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15754618 tgcaatatcaatcatcacattcttggcaggcacacctttttatagacacaaattgattaaagggagtccatttattagcatggctaaggtcattgtggca 15754717  T
Q  101 gctataaggaaattttatgtagttgttcctgatgaccctaaagaattatatgagcttagtttggaagagtattcaaagaaaggcaaattcaggattcatc 200  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||    
T  15754718 gctataaggaaatttgatgcagttgttcctgatgaccctaaagaattatatgagcttagtttggaagagtatacaaagaaaggaaaattcaggattgatc 15754817  T
Q  201 tcactc 206  Q
    ||||||    
T  15754818 tcactc 15754823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 15765302 - 15765507
Alignment:
Q  1 tgcaatatcaatcatcacattcttggcaggcacacctttttatagacacaaattgattaaagggagtccatttattagcatggctaaggtcattgtggca 100  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||  ||||||||    
T  15765302 tgcaatatcaatcatcacattcttggcaggaacaccattttatagacacaaattgattaaagggagtcctttcattagcatggctaaggtatttgtggca 15765401  T
Q  101 gctataaggaaattttatgtagttgttcctgatgaccctaaagaattatatgagcttagtttggaagagtattcaaagaaaggcaaattcaggattcatc 200  Q
    |||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||    
T  15765402 gctataagaaaatttgatatagttgttcctaatgaccctaaagaattatatgagcttagtttgaaagagtatacaaagaaaggcaaattcaagattgatc 15765501  T
Q  201 tcactc 206  Q
    ||||||    
T  15765502 tcactc 15765507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 15778967 - 15779138
Alignment:
Q  1 tgcaatatcaatcatcacattcttggcaggcacacctttttatagacacaaattgattaaagggagtccatttattagcatggctaaggtcattgtggca 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |||||||||  ||| ||| |||| ||||||||||||||||    
T  15778967 tgcaatatcaatcatcacattcttggcaggcacacctttctatagacacaaattgctttcagggagtcccattaatagaatggttaaggtcattgtggca 15779066  T
Q  101 gctataaggaaattttatgtagttgttcctgatgaccctaaagaattatatgagcttagtttggaagagtat 172  Q
    |||||||||||||    ||||  ||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  15779067 gctataaggaaatggggtgtaactgttcctgaagacccaaaagaactatatgagcttagtttggaagagtat 15779138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 15728862 - 15729044
Alignment:
Q  1 tgcaatatcaatcatcacattcttggcaggcacacctttttatagacacaaattgattaaagggagtccatttattagcatggctaaggtcattgtggca 100  Q
    ||||||||| ||||| | ||| |||||||||||||| || |||||||| |||||   || ||| ||||| |||| ||  ||||||||||| || |||||     
T  15728862 tgcaatatctatcataatatttttggcaggcacaccattctatagacataaattacctacaggaagtccctttactaaaatggctaaggtaatagtggct 15728961  T
Q  101 gctataaggaaattttatgtagttgttcctgatgaccctaaagaattatatgagcttagtttggaagagtattcaaagaaagg 183  Q
    ||||| | |||||   ||||   | |||||  ||||||||||||| ||||||| |||  ||||||||||||| ||||||||||    
T  15728962 gctatgaagaaatggaatgtgcctattcctagtgaccctaaagaactatatgaacttgatttggaagagtatgcaaagaaagg 15729044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 15736639 - 15736818
Alignment:
Q  4 aatatcaatcatcacattcttggcaggcacacctttttatagacacaaattgattaaagggagtccatttattagcatggctaaggtcattgtggcagct 103  Q
    |||||| ||||| ||||| |||||||||||||  || |||||||| |||||   |  ||||||||| || | ||  |||||||||||||||||||| ||     
T  15736639 aatatctatcataacatttttggcaggcacacaattctatagacataaattacctgcagggagtcccttcactaaaatggctaaggtcattgtggctgca 15736738  T
Q  104 ataaggaaattttatgtagttgttcctgatgaccctaaagaattatatgagcttagtttggaagagtattcaaagaaagg 183  Q
    |||| |||||   ||||   | |||||  ||||||||||||| | ||||||||   ||||||||||||| ||||||||||    
T  15736739 ataaagaaatggaatgtgtctattcctagtgaccctaaagaactttatgagctagatttggaagagtatgcaaagaaagg 15736818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 33412906 - 33412853
Alignment:
Q  2 gcaatatcaatcatcacattcttggcaggcacacctttttatagacacaaattg 55  Q
    |||||||||||||| | |||||||| ||| ||||| ||||||||||||||||||    
T  33412906 gcaatatcaatcatgatattcttgggaggaacacccttttatagacacaaattg 33412853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University