View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14554_low_3 (Length: 552)
Name: NF14554_low_3
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14554_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 4e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 305 - 533
Target Start/End: Complemental strand, 27845465 - 27845237
Alignment:
| Q |
305 |
aattacagtcaaagtaagtatttgcaaatggctagttaacaaaggttaaaataaagctatatcccttgattccnnnnnnnn-caagcaaaagttttgatg |
403 |
Q |
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| T |
27845465 |
aattacagtcaa-gtaagtatttgcaaatggctagttaacaaaggttaaaataaagctatatcccttgattccaaaaaaaaacaagcaaaagttttgatg |
27845367 |
T |
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| Q |
404 |
cttattttgtctgcaaaacaaaagtgtgtataagtaactgtctcttttgtccctcttggtagacttatgtacaaatataacaggtactaacttattccct |
503 |
Q |
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| T |
27845366 |
cttattttgtctgcaaaacaaaagtgtgtataagtaactgtctcttttgtccctcttggtagacatatgtacaaatataacaggtactaacttattcccg |
27845267 |
T |
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| Q |
504 |
accctagctatatagctctcataagcattt |
533 |
Q |
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| T |
27845266 |
accctagctatatagctctcataagcattt |
27845237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 142 - 290
Target Start/End: Complemental strand, 27845721 - 27845558
Alignment:
| Q |
142 |
gtgtaatgaaaatgttgttagcataaggtcaatttcaaaattgatatgttttaagtctgatcta----------------ataaaaatgttgttaggatg |
225 |
Q |
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| T |
27845721 |
gtgtaatgaaaatgttgttagcataaggtcaatttcaaaatatatatgttt-aagtctgatctattatccgtcgtttgtaataaaaatgttgttaggatg |
27845623 |
T |
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| Q |
226 |
gttcttccagccatatatgatatatactttgttactcaatgctagtataattcatccttataaaa |
290 |
Q |
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| T |
27845622 |
gatcttccagccatatatgatatatactttgttactcaatgctagtataattcatccttataaaa |
27845558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 27845786 - 27845706
Alignment:
| Q |
48 |
acatggtctttaatcggttaaaatagaaatgaatctcactgaattaggctacacataaatagcatgtgtaatgaaaatgtt |
128 |
Q |
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| T |
27845786 |
acatggtctttaatcggttaaaatagaaatgaatctcactgaattaggctacacataaatagcatgtgtaatgaaaatgtt |
27845706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 305 - 453
Target Start/End: Complemental strand, 20140343 - 20140192
Alignment:
| Q |
305 |
aattacagtcaaagtaagtatttgcaaatggctagttaacaaaggttaaaataaagctatatcccttgatt---ccnnnnnnnncaagcaaaagttttga |
401 |
Q |
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| T |
20140343 |
aattacagtcaaagtaagtatttgcaaatggctagttaacaatggttaaaataaagctatatcccttgattaaaaaaaaaacaacaagcaaaagttttga |
20140244 |
T |
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| Q |
402 |
tgcttattttgtctgcaaaacaaaagtgtgtataagtaactgtctcttttgt |
453 |
Q |
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| T |
20140243 |
tgcttattttgtctgcaaaacaaaactgtgtgtaagtaactgtctcttttgt |
20140192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 305 - 453
Target Start/End: Original strand, 22192526 - 22192677
Alignment:
| Q |
305 |
aattacagtcaaagtaagtatttgcaaatggctagttaacaaaggttaaaataaagctatatcccttgatt---ccnnnnnnnncaagcaaaagttttga |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22192526 |
aattacagtcaaagtaagtatttgcaaatggctagttaacaatggttaaaataaagctatatcccttgattaaaaaaaaaacaacaagcaaaagttttga |
22192625 |
T |
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| Q |
402 |
tgcttattttgtctgcaaaacaaaagtgtgtataagtaactgtctcttttgt |
453 |
Q |
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| T |
22192626 |
tgcttattttgtctgcaaaacaaaactgtgtgtaagtaactgtctcttttgt |
22192677 |
T |
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